Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0683 ATGGTTGCTGCCAAGAAGACTAAGAAGACTCATGAGAGTATCAACAACAGGCTCGCTCTTGTGATGAAGAGTGGGAAATATACTTTGGGTTATAAGACGGTTCTCAAATCCCTCAGGAGCTCCAAAGGGAAATTGATTATTATTGCCAACAATTGCCCACCATTGAGGAAGTCTGAAATTGAGTACTATGCTATGTTGGCCAAGGTTGGAGTTCACCATTACAACGGGAACAACGTGGATTTGGGCACCGCATGTGGGAAATATTACAGAGTTTGCTGCCTTAGCATTGTTGATCCTGGTGATTCCGATATTATCAAGACAATGCCCACCGAGCAGTAG 339 0.4395 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTMPTEQ* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0683 112 Gene3D - 2 108 IPR029064 -
Pvu4g0683 112 PANTHER RIBOSOMAL PROTEIN L30 1 112 IPR039109 GO:0003723
Pvu4g0683 112 SUPERFAMILY L30e-like 13 107 IPR029064 -
Pvu4g0683 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Pvu4g0683 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Pvu4g0683 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Pvu4g0683 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Pvu4g0683 112 PANTHER 60S RIBOSOMAL PROTEIN L30 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0683 Pvu-Chr4 8749390 8751296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0683 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 86.607 4.62e-71 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0683 K02908 - gmx:100806260 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0203 8 1721320 1722961 Pvu4g0683 4 8749390 8751296 PCT