Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0680 ATGGATAACCGATTGTTTTCTACTCAGAATAAGAACTTCGAGGAGGGGTTGGCCAGTGGCGAGAAATTAAAACGTTCAAATTCTTGTCCCGTTCAAATAGGGACAAATGGGAAATTTTGCCACCAATGCCGGCAAAAGAAAGAGGATTTTGCTGCAACATGCAAGAACTTGAAGAAAGGGAAGCCTTGTCCGATTAAGTACTGCCACAAGTGCCTCTTGACTAGGTATGGGGAGAATTCTGAAGAAGTGGGACATTTGGCTTATTGGACATGTCCGAAGTGTAGAGGATTTTGTAACTGCAGCTTATGCCAGAAAAAACGAGGTGAGCAACCTACTGGTCCCTTATATCGTAATGCCAAGGAATCTGGTTTTAAGTCTGTTGCGGAAATGCTTGCCGTTAAGAAGGCTAGTGAGGAAAAAGAGCTTGAAGTACATCTCTCGGGCGAATTTGGGAAAGAAAATTGTACAGATACAAATGATACTAAAGTTTGCAACAAAGAGTATGATGAAGGAGAGAGCAAAACAATTGAGAAGGAAATTCTTTTGCCCCCTGGAATGGAGTTAAAAAAAATATTTGGCATTGAGTTACCACTCAAAGAAGTTGGGAATGCATTACAACTTTTAGAGTTTTACAAAGTATTTAGAAAGGCTCTTGATCTCAAGGAAGGAGAAGCTGAAGCCATGCTAGAAGAATTAGTATGCAAACAAAGCATGCATGGACAAAACACCTTACTAGTTGAATTTCATATTAAAGTGTTGGAGTTGATCCTAAACAATTCCGGAAATGAGGATGAAAATAATTCATGGTTAAAACATCTGGAGGATTTAATCATGAAATCGTATCATATATTAAATGATTTTCCTTTGGATTGGCTTCAAGAAGGCATCAGTGGATATTATAAGTTGGATTTGTCTCAAAAGTTTAAACTGATGAATTTTCTCTGTGACGAAGCTCTGAATACCGAGAAATTGAGGAGCTATATTCACGAGGAAAATTCAAGACATGCAAAAGAAGTGAAAGAAGCAAAACACAAGGTTGCTGCAACCAAGGAAAAGGTAAAGTGTCTTGAGAAGAAGTTGCGGAGTGAGAAAGCCAAAGCTGTTCCTTCAACTGTGTCTCCCTATCCGATGGAGGAGCATGAGGCTCTTCTTTCGAAAATAAGAATTGAGGTTGATGAAGCACACACAGAGATGCTTGGATTAAAGGGCACAACTCAAAAAGCGAAACTAGGTTGTGATGCTCTGAGGATCAAACCTGAATTTGTAGACAATAATGGTAAAACATTCTGGAATTTTAGAAGTTGCAGTAGTGAATGTACTGTTCTTTTGCAAGAAATTAAAATACAGGATGAAATTGCCAAAGCACCAGAAGAAAAGTGGTATGTTTATGGTCCTGACAAGAAGGAAGAGGTTCATAAATATATTTCCACAAGGGCAAAAAGACTTAACCGTCAAAAGGTTTCTCACGAGCTTTTAAGTGAAGCAAGTTCGTAG 1494 0.3869 MDNRLFSTQNKNFEEGLASGEKLKRSNSCPVQIGTNGKFCHQCRQKKEDFAATCKNLKKGKPCPIKYCHKCLLTRYGENSEEVGHLAYWTCPKCRGFCNCSLCQKKRGEQPTGPLYRNAKESGFKSVAEMLAVKKASEEKELEVHLSGEFGKENCTDTNDTKVCNKEYDEGESKTIEKEILLPPGMELKKIFGIELPLKEVGNALQLLEFYKVFRKALDLKEGEAEAMLEELVCKQSMHGQNTLLVEFHIKVLELILNNSGNEDENNSWLKHLEDLIMKSYHILNDFPLDWLQEGISGYYKLDLSQKFKLMNFLCDEALNTEKLRSYIHEENSRHAKEVKEAKHKVAATKEKVKCLEKKLRSEKAKAVPSTVSPYPMEEHEALLSKIRIEVDEAHTEMLGLKGTTQKAKLGCDALRIKPEFVDNNGKTFWNFRSCSSECTVLLQEIKIQDEIAKAPEEKWYVYGPDKKEEVHKYISTRAKRLNRQKVSHELLSEASS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0680 497 Coils Coil 377 397 - -
Pvu4g0680 497 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 35 131 IPR018866 -
Pvu4g0680 497 ProSiteProfiles DDT domain profile. 198 262 IPR018501 -
Pvu4g0680 497 PANTHER OS05G0300700 PROTEIN 35 478 - -
Pvu4g0680 497 Pfam DDT domain 200 258 IPR018501 -
Pvu4g0680 497 Coils Coil 332 366 - -
Pvu4g0680 497 PANTHER OS05G0300700 PROTEIN 35 478 IPR040221 GO:0006355
Pvu4g0680 497 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 298 328 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0680 Pvu-Chr4 8707645 8712523 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pvu4g0680 zf-4CXXC_R1 2.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0680 - - pvu:PHAVU_004G063200g 788.875