Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0678 ATGCCAGCATGCTTCACATATTCAGATGCTAAAATCTTGACAGAAAAATGTGCAACCCCAATTCTTAAGCAGGTGAAGAGTGATTTTACCAGATATTGGTATGGAGATGAGCAGCATTTGGATGAGTCATGGAAACAAATATTCTTATATGACCATTGCCGGCAAAAGAAAGAGGATTTTGCTGCAACATGCAAGAACTTGAAGAAAGGGAAGCCTTGTCCGATTAAGTACTGCCACAAGTGCCTCTTGACTAGGTATGGAGAGAATGCTGAAGAAGTGGCACATTTGGCTGATTGGATATGTCCAAAGTGTCGAGGGTTTTGCAACTGCAGCTTATGCCAGAAAAAACGAGGTGAGCAACCCACTGGTCCCCTATACCGTAATGCCAAAGAATCTGGTTTTAAGTCTGTAGCAGAAATGCTTGCGGTTAAAAAGGCTTCGGATGATTCAGGATTAAATAAGGAACTTGAAGTACATTTCTCAGGAGAATTTGGAAAAGAAAGTTGTATAGATACAAATGATGCCCCCTTCCAAGAAGAGAGCAAACCAATTGAGGAGGAAATTCTTTTGCCCCCTGGCAAAGAGTTGAAAGAAATATTTGGCATTGAGGTACCCTCCAAAGATGTTGGAAATGCTTTGCAACTTTTAGAGTTTTGCAAAGTGTTTGGAAAGGCTCTTGATCTCAAGGAAGGAGAAGCTGAAGCCATACTAGAAGAATTAGTATGTAAACAAAACATGCATGGAGAAAACACCTTCCTGATTGAATTTCATATTAGAGTGTTGGACTTGATCCTAAACAATTCGAGAAATGAGTCTCCATCCTTACCTACTAGGGATGGAAATAATTCATGGTTGAAACATGTGGAGGATTTAATCATGAAATCCTATCATATATTAAATGATTTTCCTTTGGATTGGCTTCAAGAAGGAATCGGTGGATATTATAAGTTGGATTTGTCTAAAAAGTTTAAACTGATGACTTTTCTTTGTGACGAAGCTCTGAACACTGAGAAACTGAGGAGTTATATTCATGAGGAAAATTCAAGACATGCAAAAGAAGTGAAAGAAGCAAAACATAAGGTTGCTGCAACTAAGGAAAAGGTAAAGTGTCTTGAGAAGAAGTTGCGGAGTGAGAAGGCCAAAGTTGTTCATTCAACTGTGTCTCCCTTTCCGATGGAGGAGCATGAAGCTCTTCTTTCAAAAATAAGAATTGAGGTTGATGAAGCACACACTGATATGCTTGGGTTAAAGGGCATAACTCAAAAAGCGAAATTAGGTTGTGATGCTTTAAGGATCAAACCTGAATTTGTAGACAATAACGGTCAAGCATTCTGGAATTTTAGAAGTTGCAGTAGTGAATATACTGTTATTTTGCAAGAAATTAAAATAGAGGATGAAATTGCCAAAGCACCGGAAGAAAAGTGGTATGTTTATGGTCCTGACAAGAAGGAAGAGGTTCATAAATATATTTCCAAAAGGTCTAAAAGACTTAACCGGCGTAAGGTTTCTCACGAGCTTTTAAGTGAAGCAAGTTTGTAG 1539 0.3847 MPACFTYSDAKILTEKCATPILKQVKSDFTRYWYGDEQHLDESWKQIFLYDHCRQKKEDFAATCKNLKKGKPCPIKYCHKCLLTRYGENAEEVAHLADWICPKCRGFCNCSLCQKKRGEQPTGPLYRNAKESGFKSVAEMLAVKKASDDSGLNKELEVHFSGEFGKESCIDTNDAPFQEESKPIEEEILLPPGKELKEIFGIEVPSKDVGNALQLLEFCKVFGKALDLKEGEAEAILEELVCKQNMHGENTFLIEFHIRVLDLILNNSRNESPSLPTRDGNNSWLKHVEDLIMKSYHILNDFPLDWLQEGIGGYYKLDLSKKFKLMTFLCDEALNTEKLRSYIHEENSRHAKEVKEAKHKVAATKEKVKCLEKKLRSEKAKVVHSTVSPFPMEEHEALLSKIRIEVDEAHTDMLGLKGITQKAKLGCDALRIKPEFVDNNGQAFWNFRSCSSEYTVILQEIKIEDEIAKAPEEKWYVYGPDKKEEVHKYISKRSKRLNRRKVSHELLSEASL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0678 512 Coils Coil 347 381 - -
Pvu4g0678 512 ProSiteProfiles DDT domain profile. 206 270 IPR018501 -
Pvu4g0678 512 PANTHER OS05G0300700 PROTEIN 53 493 IPR040221 GO:0006355
Pvu4g0678 512 Pfam DDT domain 207 266 IPR018501 -
Pvu4g0678 512 Pfam Protein of unknown function (DUF2854) 6 51 IPR021275 -
Pvu4g0678 512 SMART testlast3 206 270 IPR018501 -
Pvu4g0678 512 Coils Coil 392 412 - -
Pvu4g0678 512 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 312 343 IPR028942 -
Pvu4g0678 512 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 52 141 IPR018866 -
Pvu4g0678 512 PANTHER OS05G0300700 PROTEIN 53 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0678 Pvu-Chr4 8564326 8574795 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pvu4g0678 zf-4CXXC_R1 2.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0678 - - pvu:PHAVU_004G063200g 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0678 4 8564326 8574795 Pvu4g0678 4 8564326 8574795 ECH