Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0661 ATGGGTCGTGCAAGAATAACCTTAAAACACATCTCAAATGAAAGATCTCGCAAGACAACTTTCTTGCGAAGAAAAAGAGGACTAATGAAGAAGATCTCTGAATTATCCAAGAAGTGTGGTGGTGAGCACTGTTTGATTGTGTTTGATGATGATAATGGTGATCTTGGGCCAATGACTTCACCCCAAAACCCGGTAGAGATACATTCCATGATTCAAAAGTATTATGAAAGTCAATTAAAAAATGGGAGACCTCACAAGACTTATGGTATTGATGAGTTTCTTGAGAATAGGAAAAACATGATTGAGGTTGAGATTTCTAGAGTGGATAAACAGATTAGCAACATCAAGTATCCCACTTGGGATCCAAGTATGAAAAACATGGAAGAGGATCAATTGAGGGCCTTTTGTGCTCATGTAGAAGCCAAAATTGAAGCTTGTGATAAGGGAATTCAATTGTTGAAGAATAAGCCTTTGGGTTTTGTGCCAAACATGTCTCAAGAAAATACTACTGCTACCACCTCACATCCAAACCAAGTCAATTACTTGCAAAGCATCTCTCAAAGCGAAGTCCTTCTAGATGATTTCTTGAATCAACTTAATGATAAGAATTATGGAATGGCAGATTTTAGTAATACAGTTGATGTGCCACTAAATTCAACCAATGAACTTAGTGACTTGGAGTTTGAGGAATTGATTATGGGACTTAGTAGTTGTGATTGGCCTTATCAAGCATGTGATGATCCTGTGGGTTGTAGCAGTGAAGCTGATGAATATGTCTTGCCAAATATTTGTGTTGAATATCCAAATGAGCAGCAAGGAGGAGGAGATTTGCATGCCTTGCCACCACCACTAGATGTATTTCAAACAAATTACTATAACATGTATTTCTGA 891 0.376 MGRARITLKHISNERSRKTTFLRRKRGLMKKISELSKKCGGEHCLIVFDDDNGDLGPMTSPQNPVEIHSMIQKYYESQLKNGRPHKTYGIDEFLENRKNMIEVEISRVDKQISNIKYPTWDPSMKNMEEDQLRAFCAHVEAKIEACDKGIQLLKNKPLGFVPNMSQENTTATTSHPNQVNYLQSISQSEVLLDDFLNQLNDKNYGMADFSNTVDVPLNSTNELSDLEFEELIMGLSSCDWPYQACDDPVGCSSEADEYVLPNICVEYPNEQQGGGDLHALPPPLDVFQTNYYNMYF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0661 296 PANTHER PROTEIN, PUTATIVE-RELATED 3 232 - -
Pvu4g0661 296 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Pvu4g0661 296 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu4g0661 296 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu4g0661 296 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Pvu4g0661 296 PANTHER MADS BOX PROTEIN 3 232 - -
Pvu4g0661 296 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Pvu4g0661 296 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pvu4g0661 296 CDD MADS 2 52 - -
Pvu4g0661 296 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0661 Pvu-Chr4 8232944 8233834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0661 1 144 Type I MADS-box Gene Family AT5G55690 32.432 3.78e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu4g0661 SRF-TF 8.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0661 - - pvu:PHAVU_004G060500g 487.263