Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0660 ATGGGTTGTGCAAGAATAACCTTAAAACACATCTCAAATGAAAGATCTTGCAAGACAACTTTTTTGCGAAGAAAAAGAGGACTAATGAAGAAGGTTTCTGAATTTTCCAAGAAGTGTGGTGGTGAGCACTGTTTGATTGTGTATGATGGTGGTAATGGGGATGTTGGACCAGTGACTTCACCCCAAAACCCTGTAGAGGTACATTCCATGATTCAAAAGTATTATGAAAGTCAATTAAAGAATTGGAGACCTCATAAGACTTATGGTATTGAAGAGTTTATTGAGAATAGGAAAAACATGATTGAGGCTGAGATTTCCAGAGTGGATAAACAAATTAGCAGCATCAAGTATCCAACTTGGGATCCAAGTATGATAAACATGGAAGAGGATCAGTTGAGGACCTTCTGTGCTCATGTGGATGCCAAAATTGAAGCTTGTGGCAAAGGAATTAAATTGTTGAAGAATAAGCCTCAAGGTTTTGTGCCAAACATGTCTCAGGAAAATACTACTGCTACCACCCCACTTCCAAATCAAGTCAATTACTTGCAAAGCATCTCTCAAAGCGAAGTCCTTCTTGATCCAGTTGATCCGCCACTAAATTCAACCAATGAACTTACTGTGTTAGAGTTTGAGGAATTGATTATGGGACTTAGTAGTTGTGATTGGCCTTATCAAGCATGTGATGATCATGTGGGTTGTAGCAGTGAGGCTCGTGAATCTGTCTTGCCAAGTATTTGCGATCAATATCAAAATGAGCAACAAGGAGGAAGAGATTTGCATGTTTTGTCGTCACCATTAGATTTATTTCAAACAAATTACTATAACATGTTTTCCTGA 837 0.3835 MGCARITLKHISNERSCKTTFLRRKRGLMKKVSEFSKKCGGEHCLIVYDGGNGDVGPVTSPQNPVEVHSMIQKYYESQLKNWRPHKTYGIEEFIENRKNMIEAEISRVDKQISSIKYPTWDPSMINMEEDQLRTFCAHVDAKIEACGKGIKLLKNKPQGFVPNMSQENTTATTPLPNQVNYLQSISQSEVLLDPVDPPLNSTNELTVLEFEELIMGLSSCDWPYQACDDHVGCSSEARESVLPSICDQYQNEQQGGRDLHVLSSPLDLFQTNYYNMFS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0660 278 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Pvu4g0660 278 PANTHER MADS BOX PROTEIN 3 194 - -
Pvu4g0660 278 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Pvu4g0660 278 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pvu4g0660 278 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Pvu4g0660 278 PANTHER PROTEIN, PUTATIVE-RELATED 3 194 - -
Pvu4g0660 278 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0660 Pvu-Chr4 8217391 8218227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0660 1 144 Type I MADS-box Gene Family AT5G55690 30.405 2.93e-13 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu4g0660 SRF-TF 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0660 - - pvu:PHAVU_004G061500g 578.17