Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0658 ATGGGTCGTGCAAGAATAACCTTAAAACACATCTCAAATGAAAGATCTCGCAAGACAACTTTCTTGCGAAGAAAGAGAGGACTAATGAAGAAGATCTCTGAATTTTCCAAGACGTGTGGTGGTGAACACTGTTTGATTGTGTTTGATGATGATAATGGTGATGTTGGGCCAGTGACTTCACCCCAAAACCCGGTAGAGATACATTCCACGATTCAAAAGTATTATGAAAGTCAATTAAAGAATGGGAAACCTCACAAGACTTATGGTATTGATGAGTTTCTTGGGAATAGGAAAAACATGATTGAGGTTGAGATTTCCAAAGTGAATAAACAGATTAGCAACATCAAGTATCCCACTTGGGATCCAAGTATGGCAAACATGGAAGAGGATCAATTGAGGGCCTTCTGTGCTCATGTAGATGCGAAAATTGAAGCTTGTGATCAGGGAATTCAATTGTTGAAGAATAAGCCTCTGGGTTTTGTGTCAAACATGTCTCAAGAGAATACTACTGCTACCACCTCACATCCAAACCAAGTCAATTACTTGCAAAGCATCTCTCAAAGCGAAGTCCTTCTAGATGATTTCTTGAATCAACTTAATGATAAGAATTATGGAATGGTAGATTTTAGTAATACAGTTGATGTGCCACTAAATTCAACCAATGAACTTAGTGACTTGGAGTTTGAGGAATTGATTATGGGACTTAGTAGTTGTGATTGGCCTTATCAAGCATGTGATGATCCTGTGGGTTGTAGCAATGAAGCTGATGAATCTGTCTTGCCACATATTTGTGTTGAATATCAAAATGAGCAGCAAGGAGGAGGAGATTTGCATGCCTTGCCACCAACATTGGATGTATTTCAAACAAATTACTATAACATGTATTTCTGA 891 0.3827 MGRARITLKHISNERSRKTTFLRRKRGLMKKISEFSKTCGGEHCLIVFDDDNGDVGPVTSPQNPVEIHSTIQKYYESQLKNGKPHKTYGIDEFLGNRKNMIEVEISKVNKQISNIKYPTWDPSMANMEEDQLRAFCAHVDAKIEACDQGIQLLKNKPLGFVSNMSQENTTATTSHPNQVNYLQSISQSEVLLDDFLNQLNDKNYGMVDFSNTVDVPLNSTNELSDLEFEELIMGLSSCDWPYQACDDPVGCSNEADESVLPHICVEYQNEQQGGGDLHALPPTLDVFQTNYYNMYF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0658 296 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pvu4g0658 296 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Pvu4g0658 296 PANTHER MADS BOX PROTEIN 3 233 - -
Pvu4g0658 296 PANTHER PROTEIN, PUTATIVE-RELATED 3 233 - -
Pvu4g0658 296 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Pvu4g0658 296 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Pvu4g0658 296 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu4g0658 296 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu4g0658 296 CDD MADS_SRF_like 2 69 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pvu4g0658 296 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0658 Pvu-Chr4 8206979 8207869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0658 1 144 Type I MADS-box Gene Family AT5G55690 33.108 1.54e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu4g0658 SRF-TF 2.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0658 - - pvu:PHAVU_004G060500g 489.574