Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0656 ATGGGTCGTGCAAGAATAACCTTAAAACACATCTCAAATGAAGAATTTCGCAAGACAACTTTCTTGCGAAGAAAGAGAGGACTAATGAAGAAGATCTCTGAATTTTTCAAGAAGTGTGGTGGTGAACACTGTTTGATTGTGTTTGATGATGATAATGGGGATGTTGGGCCAATGACTTCACCCCAAAACCCTGTAGAGTATTATGAAAGTCAAATAAAGAATGAGAGACCTCACAAGACTTATGGTATTGAAGAGTTTCTCGAGAATAGGAAAAACATGATTGAGGCTGAGATTTCCAGAGTGGATAAACATATTAGCAGCATCAAGTATCCAACTTGGGATCCAAGTATGATAATGATGGAAGAGGATCAATTGACGGTCTTTTGTGCTCATGTGGATGCCAAAATTGAAGCTTGTGATCAAGGAATTAAATTGTTGAAGGATAATGCTCAAGGTTTTGTGCCGAACATGGTTATGGAAAATACTACTGCTACCACCTCACATTCAAACCAAGTCAATTACTTGCAAAACATCTCTCAAAGCGAAGTCCTTCTTGATGATTTTAGTTGTCTAATTGATGTGCCACTAAATTCAACCAATGAACTTAATGACTTGGAGTTTAAGGAATTGATTATGGGACTTAGTAGTTGTGATTGGCCTTATCAAGCATGTGATGATCTTGTGGGTTGTAGCAGTAAAGTTGATGAATTTGTCTTACCAAGTATTTGTGTTGAATATCAAGGAGGAGAAGATTTGCATGTCTTGTCACCATCATTGGATGTATTTCAAACAAATTACTATAACATGTTTTTTTTTAATATTTAA 825 0.3612 MGRARITLKHISNEEFRKTTFLRRKRGLMKKISEFFKKCGGEHCLIVFDDDNGDVGPMTSPQNPVEYYESQIKNERPHKTYGIEEFLENRKNMIEAEISRVDKHISSIKYPTWDPSMIMMEEDQLTVFCAHVDAKIEACDQGIKLLKDNAQGFVPNMVMENTTATTSHSNQVNYLQNISQSEVLLDDFSCLIDVPLNSTNELNDLEFKELIMGLSSCDWPYQACDDLVGCSSKVDEFVLPSICVEYQGGEDLHVLSPSLDVFQTNYYNMFFFNI* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0656 274 PANTHER PROTEIN, PUTATIVE-RELATED 3 205 - -
Pvu4g0656 274 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Pvu4g0656 274 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Pvu4g0656 274 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Pvu4g0656 274 PANTHER MADS BOX PROTEIN 3 205 - -
Pvu4g0656 274 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pvu4g0656 274 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0656 Pvu-Chr4 8190012 8190856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0656 1 137 Type I MADS-box Gene Family AT5G55690 31.507 1.00e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu4g0656 SRF-TF 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0656 - - pvu:PHAVU_004G060500g 454.521