Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0655 ATGGGTCGTGCAAGAATAACCTTAAAACACATCTCAAATGAAAAATTTCGCAAGACAACTTTCTTGCGAAGAAAGAGAGGACTAATGAAGAAGATCTCTGAATTTTCCAAAAAGTGTGGTGGTGAACACTGTTTGATTGTGTTTGATGATGATAATGGGGATGTTGGGCCAGTGACTTCACCCCAAAACCCTGTAGAGGTACATTCCATGATTCAAAAGTATTATGAAAGTCAAATAAAGAATGAGAGACCTCGCAGGACTTATGGTATTGAAGAGTTTCTTGAGAATAGGAAAAACATGATTGAGGCTGAGATTTCCAGAGTGGATAAACAGATTAGCAGCATCAAGTATCCAACTTGGGATCAAAGTATGATAATCATGGAAGAGGATCAATTGAGGGCCTTTTGTGTTCATGTGGATGCCAAAATTGAAGCTTGTGATCGGGGAATTAAATTGTTGAAGGATCAACCTCAAGGTTTTGGGTCAAACATGGCTAAGGAAAATGCTACTGCTACCACCTCACATCCAAATCAAGGCAATTACTTGCAAAGCATCTCTCAAAGCGAAGCCCTTCTTGATTATTTTAGTAGTCCAGTTGATGTGCCACTAAATTCAACCAATGAACTTAGTGACTTGGAGTTTGAGGAATTGATTATGGGACTTAATAGTTGTGATTGGCCTTATCAAACATGTGATGATCTTGTGGGTTGTAGCAATGAAGTTGATGAATGTGTCTTACCAAGTATTTGTGTTGAATATCAAGGAGGAGCAGATTTGTATGCCTTGCCACCATCACTAGATGTAATAGATTACTCTAACATGTTTTTCTGA 831 0.3839 MGRARITLKHISNEKFRKTTFLRRKRGLMKKISEFSKKCGGEHCLIVFDDDNGDVGPVTSPQNPVEVHSMIQKYYESQIKNERPRRTYGIEEFLENRKNMIEAEISRVDKQISSIKYPTWDQSMIIMEEDQLRAFCVHVDAKIEACDRGIKLLKDQPQGFGSNMAKENATATTSHPNQGNYLQSISQSEALLDYFSSPVDVPLNSTNELSDLEFEELIMGLNSCDWPYQTCDDLVGCSNEVDECVLPSICVEYQGGADLYALPPSLDVIDYSNMFF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0655 276 Coils Coil 91 111 - -
Pvu4g0655 276 PANTHER MADS BOX PROTEIN 3 220 - -
Pvu4g0655 276 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Pvu4g0655 276 PANTHER PROTEIN, PUTATIVE-RELATED 3 220 - -
Pvu4g0655 276 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Pvu4g0655 276 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Pvu4g0655 276 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu4g0655 276 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu4g0655 276 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Pvu4g0655 276 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0655 Pvu-Chr4 8185706 8186536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0655 1 148 Type I MADS-box Gene Family AT5G55690 33.987 1.40e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu4g0655 SRF-TF 5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0655 - - pvu:PHAVU_004G060500g 476.092