Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0654 ATGGGTCGTGCAAGAATAACCTTAAAACACATCTCAAATGAAAAATTTCGAAAGACAACTTTCTTGCGAAGAAAGAGAGGACTAATGAAGAAGATCTCTGAGTTTTCCAATAAGTGTGGTGGTGAACACTGTTTGATTGTGTTTGATGATGATAATGGGGATGTTGGGCCAGTGACTTCACCCCAAAACCCTGTACAGGTACATTCCATGATTCAAAAGTATTATAGTCAAATAAAGAATGAGAGACCTCACAAGACTTATGGTATTGAAGAGTTTCTTGAGAATAGGAAAAACATGATTGAGACTGAGATTTCCAGAGTGGATAAACATATTAGCAGCATCAAGTATCCAACTTTGGATCCGAGTATCATAATCATGGAAGAGGATCAATTGAGGGCCTTTTGTGCTCATGTGGATGCCAAAATTGAAGCTTGTGATCGGGGAATTAAATTGTTGAAGGATCAGTCTCAAGGTTTTGTGCCAAACATGGCTCGGGAAAATGCTACTGCTTCCACTTCACATCCAAACCAAGTCAATTACTTGCAAAGCATATCTCAAAGTGAAGCCCTTCTTGATGATTTCTTTAAGCAACTTAATGATAAGAATTATGGAATGGTAGATTTTAGTAGTTCAGTTGATGTGCCACTAAATTCAACCAATGAACTTAGTGACTTGGAGTTTGAGGAATTGATGATGGGACTTAGTAGTGTTGATTGGCCTTATCAAGCATTTTGTGGGTTGTAG 744 0.3804 MGRARITLKHISNEKFRKTTFLRRKRGLMKKISEFSNKCGGEHCLIVFDDDNGDVGPVTSPQNPVQVHSMIQKYYSQIKNERPHKTYGIEEFLENRKNMIETEISRVDKHISSIKYPTLDPSIIIMEEDQLRAFCAHVDAKIEACDRGIKLLKDQSQGFVPNMARENATASTSHPNQVNYLQSISQSEALLDDFFKQLNDKNYGMVDFSSSVDVPLNSTNELSDLEFEELMMGLSSVDWPYQAFCGL* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0654 247 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Pvu4g0654 247 PANTHER MADS BOX PROTEIN 3 223 - -
Pvu4g0654 247 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pvu4g0654 247 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pvu4g0654 247 PANTHER PROTEIN, PUTATIVE-RELATED 3 223 - -
Pvu4g0654 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Pvu4g0654 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu4g0654 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu4g0654 247 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0654 Pvu-Chr4 8179277 8180020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0654 1 147 Type I MADS-box Gene Family AT5G55690 34.211 3.99e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu4g0654 SRF-TF 3.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0654 - - pvu:PHAVU_004G060900g 491.886