Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu4g0651 | TCTTGCAAAACAACTTTCTTGCTAAGAAAGAGAAGACTGATGAAGAAGGTCTCCGAATTTTCCAAGAAGTGTGGTGGTGAGCATTGTTTGATTGTGTATGATGATGGTAATGGGGATGTTGGGTCAGTGACTTCACCTCAAAACCATGTAGAGACTTATAGTATTGAAGAGTTTCTTGAGAATAGGAAAAACATGATTGAGGCTGAAATTTCCAGAGTGGATAAACAGATTAGCAGCATCAAGTATCCAACTTGGGATCCAAGTATGATAAACATGGAAGAAGATCAATTGACAGCCTTTTGTGCTCATGTGGATGCCAAAATTGAAGCTTGTGATCAGGGAATTAAATTGTTAAAGGATAAGCCTCAAGGTTTTGTGCCAAACATGGTTCAGGAAAATACTACTGCTACCACCTCACATCCAAACCAAGTCAATTACTTGCAAAGTATCTCTCAAAGCGAAGTCCTTCTTGATGATTTTAGTAGTCCAATTGATGTGCCACTAAATTCAACCAATGAACTTAGTGACTTGGAGTTTGAGGAATTGATTATGGGACTTAATAGTTGTGATTGGCCTTATCAAGCATGTGATGATCTTGTGACTGTAACATTTTTTGACATCAATATGCTTCATTTCTTGAAGCTGATTTCTTTAGATTATGTAGGTTTCATCTTGCATTAA | 681 | 0.3715 | SCKTTFLLRKRRLMKKVSEFSKKCGGEHCLIVYDDGNGDVGSVTSPQNHVETYSIEEFLENRKNMIEAEISRVDKQISSIKYPTWDPSMINMEEDQLTAFCAHVDAKIEACDQGIKLLKDKPQGFVPNMVQENTTATTSHPNQVNYLQSISQSEVLLDDFSSPIDVPLNSTNELSDLEFEELIMGLNSCDWPYQACDDLVTVTFFDINMLHFLKLISLDYVGFILH* | 227 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu4g0651 | 226 | Coils | Coil | 56 | 76 | - | - | |
Pvu4g0651 | 226 | PANTHER | PROTEIN, PUTATIVE-RELATED | 1 | 187 | - | - | |
Pvu4g0651 | 226 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 3 | 36 | IPR002100 | GO:0003677|GO:0046983 | |
Pvu4g0651 | 226 | PANTHER | MADS BOX PROTEIN | 1 | 187 | - | - | |
Pvu4g0651 | 226 | SUPERFAMILY | SRF-like | 3 | 42 | IPR036879 | GO:0003677|GO:0046983 | |
Pvu4g0651 | 226 | Gene3D | - | 1 | 65 | IPR036879 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu4g0651 | Pvu-Chr4 | 8144381 | 8145211 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu4g0651 | 4 | 109 | Type I MADS-box Gene Family | AT5G55690 | 28.906 | 1.64e-07 | 48.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Pvu4g0651 | SRF-TF | 2.5e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu4g0651 | - | - | pvu:PHAVU_004G061500g | 339.347 |