Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0651 TCTTGCAAAACAACTTTCTTGCTAAGAAAGAGAAGACTGATGAAGAAGGTCTCCGAATTTTCCAAGAAGTGTGGTGGTGAGCATTGTTTGATTGTGTATGATGATGGTAATGGGGATGTTGGGTCAGTGACTTCACCTCAAAACCATGTAGAGACTTATAGTATTGAAGAGTTTCTTGAGAATAGGAAAAACATGATTGAGGCTGAAATTTCCAGAGTGGATAAACAGATTAGCAGCATCAAGTATCCAACTTGGGATCCAAGTATGATAAACATGGAAGAAGATCAATTGACAGCCTTTTGTGCTCATGTGGATGCCAAAATTGAAGCTTGTGATCAGGGAATTAAATTGTTAAAGGATAAGCCTCAAGGTTTTGTGCCAAACATGGTTCAGGAAAATACTACTGCTACCACCTCACATCCAAACCAAGTCAATTACTTGCAAAGTATCTCTCAAAGCGAAGTCCTTCTTGATGATTTTAGTAGTCCAATTGATGTGCCACTAAATTCAACCAATGAACTTAGTGACTTGGAGTTTGAGGAATTGATTATGGGACTTAATAGTTGTGATTGGCCTTATCAAGCATGTGATGATCTTGTGACTGTAACATTTTTTGACATCAATATGCTTCATTTCTTGAAGCTGATTTCTTTAGATTATGTAGGTTTCATCTTGCATTAA 681 0.3715 SCKTTFLLRKRRLMKKVSEFSKKCGGEHCLIVYDDGNGDVGSVTSPQNHVETYSIEEFLENRKNMIEAEISRVDKQISSIKYPTWDPSMINMEEDQLTAFCAHVDAKIEACDQGIKLLKDKPQGFVPNMVQENTTATTSHPNQVNYLQSISQSEVLLDDFSSPIDVPLNSTNELSDLEFEELIMGLNSCDWPYQACDDLVTVTFFDINMLHFLKLISLDYVGFILH* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0651 226 Coils Coil 56 76 - -
Pvu4g0651 226 PANTHER PROTEIN, PUTATIVE-RELATED 1 187 - -
Pvu4g0651 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 36 IPR002100 GO:0003677|GO:0046983
Pvu4g0651 226 PANTHER MADS BOX PROTEIN 1 187 - -
Pvu4g0651 226 SUPERFAMILY SRF-like 3 42 IPR036879 GO:0003677|GO:0046983
Pvu4g0651 226 Gene3D - 1 65 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0651 Pvu-Chr4 8144381 8145211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0651 4 109 Type I MADS-box Gene Family AT5G55690 28.906 1.64e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu4g0651 SRF-TF 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0651 - - pvu:PHAVU_004G061500g 339.347