Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0650 ATGTCAGATTCAGAGGAAAGTTTAGAAAGGAAGACTTGGATTCAAAAACAAGAAAATGGGTCGTGCAAAATAACCTTAAAACACATCTCAAATGAAAAATTTCGCAAGACAACTTTCTTGCGAAGAAAGAGAGGGCTAATGAAGAAGATCTCTGAATTTTCCAAGAAGTGTGGTGGTGAACACTGTTTGATTGTGTTTGATGATGATAATGGGGATGTTGGGCCAATGACTTCACCCCAAAACCCTGTAGAGGTACACTCCATGATTCAAAAGTATTATAAAAGTGAAATAAAGAATGAGAGACCTCACAAGACTTATGGTATTGAAGAGTTTCTTGAGAATAGGAAAAACATGATTGAGACTGAGATTTCCAAAGTGGATAAACATATTAGCAGCATCAAGTATCCAACTTGGGATCCAAGTATGATAATCATGGAAGAGGATCAATTGAGGGCCTTTTGTGCTCATGTGGATGCCAAAATTGAAGCTTGTGATCGGGGAATTAAATTGTTGAAGGATCAACCTCAAGGTTTTGTGTCAAACATGGCTCAAGAAAATGCTGTTGCTACCACTTCACATCCAACCCAAGCCAATTACTTGCAAAACATCTCTCAAAGCGAAACCCTTCTTGATGATTTCTTGAAGCAACTTAATGATAAGAGTTATGGAATGGTAGATTTTAGTAGTCCAGTTGATGTGCCACTAAATTCAACCAATGAACTTAGTGACCTGGAGTTTGAGGAATTGATGATGGAACTTAGTAGCTGGGATTGGCCTTATCAAGCATGTGATGATCTTGTGGGTTGTAACAATAAAGTTGATGAATCTGTCTTGCCAAGTATTTGTGTTGAATATCAAGGAGGAGGAGATTTGCATGCCTTACCACCATCACTAGATGTATCAGATGATTATTGTAACATGTTTTTTCTGAATGTTTAA 939 0.3749 MSDSEESLERKTWIQKQENGSCKITLKHISNEKFRKTTFLRRKRGLMKKISEFSKKCGGEHCLIVFDDDNGDVGPMTSPQNPVEVHSMIQKYYKSEIKNERPHKTYGIEEFLENRKNMIETEISKVDKHISSIKYPTWDPSMIIMEEDQLRAFCAHVDAKIEACDRGIKLLKDQPQGFVSNMAQENAVATTSHPTQANYLQNISQSETLLDDFLKQLNDKSYGMVDFSSPVDVPLNSTNELSDLEFEELMMELSSWDWPYQACDDLVGCNNKVDESVLPSICVEYQGGGDLHALPPSLDVSDDYCNMFFLNV* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0650 312 PANTHER PROTEIN, PUTATIVE-RELATED 22 246 - -
Pvu4g0650 312 SMART madsneu2 19 79 IPR002100 GO:0003677|GO:0046983
Pvu4g0650 312 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 70 IPR002100 GO:0003677|GO:0046983
Pvu4g0650 312 PANTHER MADS BOX PROTEIN 22 246 - -
Pvu4g0650 312 SUPERFAMILY SRF-like 22 96 IPR036879 GO:0003677|GO:0046983
Pvu4g0650 312 Gene3D - 31 93 IPR036879 GO:0003677|GO:0046983
Pvu4g0650 312 ProSiteProfiles MADS-box domain profile. 19 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0650 Pvu-Chr4 8132549 8133926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0650 20 166 Type I MADS-box Gene Family AT5G55690 34.211 3.58e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu4g0650 SRF-TF 6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0650 - - pvu:PHAVU_004G060500g 621.698