Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0637 ATGGCTTCCCTTTCATGCTTCCTTCTCTTTGCTCTTTCTCTTCTCACACCCTCTTTTGTTTCCTCCTCCACACTTCCAGACCCTGAAATGGTTGTTCAAGAGGTACAAAGAAGTATCAATGCTTCAAGGAGAAACTTGGGTTATTTATCATGCGGAACCGGGAACCCCATCGACGACTGCTGGCGGTGCCACCCTAACTGGGAGAACAACCGCCAGAGACTAGCCGACTGCGCCATCGGGTTCGGCAAGGACGCCATCGGCGGAAGAAACGGTCGAATCTACGAGGTGACAGACTCCGGCGACGACGACGCCGTGAACCCAAAGCCCGGAACCCTCCGTTACGCCGCCATACAAGACGAACCCCTGTGGATAATCTTCAAGAGGGACATGGTAATCACGCTAAAACAAGAGCTTCTGGTGAACTCTTTCAAGACAATCGACGGCAGAGGCGCCAGTGTGCACATCGCCGGCGGCGGCTGCATCACCATACACTACGTGAGCAACGTGATCGTTCACGGAATTCACATTCACGATTGCAAGCCCACGGGGAACACCAACATCAGAGACTCGCCGGAGCACTCGGGGTTTTGGACGCAATCGGACGGCGATGGAGTGTCGATCTTCAACTCGAAGCATGTTTGGATCGATCATTGCTCTCTGTCCAATTGTCGTGATGGGCTGATTGATGCCATTCATGGATCCACTGCCATCACCATCTCCAACAATTACATGACCCACCATGACAAGGTTATGCTTTTGGGACACAGTGATTCCTACACGCAGGACAAGGACATGCAGGTCACTATAGCCTTCAATCATTTTGGAGAAGGTCTTGTCCAAAGAATGCCAAGATGCAGACACGGGTATTTTCATGTGGTGAACAACGACTACACACACTGGGAAATGTATGCCATTGGAGGGAGTGCGAACCCCACCATCAACAGCCAAGGAAACAGGTTTCTTGCCCCAAACATAAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCTCCACAGAGTGAGTGGATGAGTTGGAATTGGAGATCAGAGGGTGACATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCCATCTATGCTAGGGCTTCAAGTCTCAGTGCAAGACCTTCTTCTCTTGTTGGATCCATGACCATCACTGCTGGTGCACTTACCTGCAGAAAGGGAAACCGTTGCTGA 1212 0.5091 MASLSCFLLFALSLLTPSFVSSSTLPDPEMVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCHPNWENNRQRLADCAIGFGKDAIGGRNGRIYEVTDSGDDDAVNPKPGTLRYAAIQDEPLWIIFKRDMVITLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVSNVIVHGIHIHDCKPTGNTNIRDSPEHSGFWTQSDGDGVSIFNSKHVWIDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPQSEWMSWNWRSEGDMFLNGAYFRQSGAGASSIYARASSLSARPSSLVGSMTITAGALTCRKGNRC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0637 403 Pfam Pectate lyase 136 320 IPR002022 -
Pvu4g0637 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Pvu4g0637 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Pvu4g0637 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Pvu4g0637 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Pvu4g0637 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Pvu4g0637 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Pvu4g0637 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Pvu4g0637 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Pvu4g0637 403 PANTHER PECTATE LYASE 18-RELATED 3 400 IPR045032 GO:0030570
Pvu4g0637 403 Gene3D - 54 396 IPR012334 -
Pvu4g0637 403 SMART amb_all 129 326 IPR002022 -
Pvu4g0637 403 PANTHER PECTATE LYASE 3 400 - -
Pvu4g0637 403 SUPERFAMILY Pectin lyase-like 38 397 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0637 Pvu-Chr4 7936945 7940810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0637 4 403 Polysaccharide Lyase AT5G63180 74.257 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0637 K01728 - gmx:100810380 788.875