Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0623 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGCCCTTGGACTATTGAGGAAGATCACAAGCTTATGAATTTCATTCTCAACAATGGTATTCAATGCTGGAGAGCAGTTCCCAAGCTAGCAGGATTGTTGAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTCAGACCAGACCTCAAGAGGGGTGGATTTACTGAAGTGGAAGAGGATCAAATTATACAACTACATTCATGTTTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGACAATGAAATCAAGAATCATTGGAACACAAAAATCAAAAAGAGGTTGAAGCTCCTTGGTTTGGACCCTTTCACCCTGATGCCTATTGAGCAAAAGGAAAAGTCTGGTGCTGACAAAGTTAAGACAGACATGCAGCCAAAAAGCACTTCAAATGGATCTGACCAAGGTGTGGAGAACAACAAGTCCTTGGACATGCATGCCACAGTAGAAGAGCCAAAAACAGAAGAGAAAATGGAAGAAAGCAGGGTCAAATGGGATGATACCACTGGATTTTTTAACAATTATGAAGTGCTGTGCTCACAGTTGGATTTGGGATCATGGATGAGCCAAGAAACAAAAGCCAGCACTAGTTCTTATTGTAGTTCTTCTTTCTCACTGGATGATTCCAGCAACTTTTCTGTAGATGAATCCTCTTATCTTCAGGAGAATTCCTTGCAACAATGGGTTGAGGGTTTGGATTCCATTCTCTCATGGGATAACTTCAGTCCACTTCAGAAAGATTTTCCCTTCTTGGAAAATAGGCAATAA 828 0.4106 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPFTLMPIEQKEKSGADKVKTDMQPKSTSNGSDQGVENNKSLDMHATVEEPKTEEKMEESRVKWDDTTGFFNNYEVLCSQLDLGSWMSQETKASTSSYCSSSFSLDDSSNFSVDESSYLQENSLQQWVEGLDSILSWDNFSPLQKDFPFLENRQ* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0623 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu4g0623 275 Gene3D - 69 177 - -
Pvu4g0623 275 PANTHER MYB DOMAIN PROTEIN 40 2 253 - -
Pvu4g0623 275 CDD SANT 16 61 IPR001005 -
Pvu4g0623 275 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu4g0623 275 MobiDBLite consensus disorder prediction 142 162 - -
Pvu4g0623 275 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu4g0623 275 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pvu4g0623 275 CDD SANT 70 110 IPR001005 -
Pvu4g0623 275 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 253 - -
Pvu4g0623 275 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu4g0623 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu4g0623 275 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu4g0623 275 MobiDBLite consensus disorder prediction 132 182 - -
Pvu4g0623 275 Gene3D - 11 67 - -
Pvu4g0623 275 MobiDBLite consensus disorder prediction 164 182 - -
Pvu4g0623 275 SMART sant 66 114 IPR001005 -
Pvu4g0623 275 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0623 Pvu-Chr4 7713740 7715096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0623 1 135 MYB Transcription Factor Family AT5G16600 74.815 7.55e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu4g0623 Myb_DNA-binding 8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0623 K09422 - gmx:100819471 476.863