Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0579 ATGGAAGATGAGCAGGGGCAACAGCAGCACCACCACCACCACCAACAACAACAGGAACCCAATACTCCAAACCCACAAGCCTCCGAGAGAAGTGAACCCGTGAGGTCAAGATGGACTCCCAAGCCAGAACAAATCCTTATTCTCGAGTCCATCTTCAACAGTGGCATGGTTAACCCCCCAAAAGATGAAACCGTCAGAATAAGAAAGCTGCTTGAGAAATTTGGCACCGTTGGTGATGCCAACGTCTTCTATTGGTTCCAGAACCGCCGCTCTCGCTCCCGCCGCCGCCAACGCCAGATTCAGGCCACCCTTAGCCAAGGCGGCGGTGCAAGTACTAATCCATATCAACACCACCATCCAAACAACCCTGCTCTTGTTGCAAACATGGCTTTTGCTACTGCTAATTCCTCTTTCCTCAACCCCTCTTATGTACCTGGTTCTTCCTCCTCCTGCGCTGCCGGCGGCACTGGTAGTGGTGAAGAAAGCTTGGATGATTTCTTCTCACCGTCTACTCAAATGGGTTTTCCAGGAATTGATCATCATACTTCAGCTGCATCATCATCAGTTTTGTACCCTCTTGGACCTTCCAATTTGAACTATCACTCTGGATTTGGGGGAAATTCAGGAGTCATCACGGTGTTCATCAATGGGGTTCCAACAGAAGTTCCAAGGGGGCCAATGGACATCAAAACAGCGTTTGGTGAAGATGTAATGTTAGTTCATTCCTCTGGAATGTCACTTCCCACCAATGAGTTTGGTTTCTTGATGCTGGGATTGCAGCATGGTGAAAGCTACTTTGTGGTTTCAAAGCAAACACAAGTATGA 825 0.4848 MEDEQGQQQHHHHHQQQQEPNTPNPQASERSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQIQATLSQGGGASTNPYQHHHPNNPALVANMAFATANSSFLNPSYVPGSSSSCAAGGTGSGEESLDDFFSPSTQMGFPGIDHHTSAASSSVLYPLGPSNLNYHSGFGGNSGVITVFINGVPTEVPRGPMDIKTAFGEDVMLVHSSGMSLPTNEFGFLMLGLQHGESYFVVSKQTQV* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0579 274 MobiDBLite consensus disorder prediction 18 33 - -
Pvu4g0579 274 MobiDBLite consensus disorder prediction 1 40 - -
Pvu4g0579 274 Gene3D - 35 102 - -
Pvu4g0579 274 Pfam Homeodomain 35 95 IPR001356 GO:0003677
Pvu4g0579 274 ProSiteProfiles 'Homeobox' domain profile. 31 96 IPR001356 GO:0003677
Pvu4g0579 274 MobiDBLite consensus disorder prediction 94 120 - -
Pvu4g0579 274 MobiDBLite consensus disorder prediction 98 119 - -
Pvu4g0579 274 SMART HOX_1 33 100 IPR001356 GO:0003677
Pvu4g0579 274 MobiDBLite consensus disorder prediction 1 17 - -
Pvu4g0579 274 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 271 IPR044558 GO:0003700|GO:0048830
Pvu4g0579 274 SUPERFAMILY Homeodomain-like 29 102 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0579 Pvu-Chr4 6893406 6895776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0579 16 274 Wox Gene Family AT3G03660 52.015 1.00e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pvu4g0579 Homeodomain 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0579 - - aprc:113866574 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1108 1 27360508 27362916 Pvu4g0579 4 6893406 6895776 PCT