Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0578 ATGAGTACCTCACTACACTTCAGGAATAGTGGTTGTGGGTTCAGTGCTGAAATGAATGTTTTTTCTTCACCTCCTGTTCCTGTTCTTGCTCTCCAGTGTTCAAACACTTTGGGGTTCATGGGTGGAGGCACAGAAGCTGAAAGTTCTGACATGCCCTTTCAGAAATCGAACTTCTCAGTGATCAAACACCAGGAGGAGTTGGAGGAGGAGGAGGAGGAAGAAGAATCTTTTGGGGTTGAGAACAAGAGCTTGTCTCTGAAACCTGGTGAAGAGCTTGAAGCTAATAGTTCTTCTGCCACAGGGAAAATTAGAGAAACTAAGCTTTGTGCTAGAGGACATTGGAGGCCAGTTGAAGATGACAAACTTAAAGAGCTTGTTGCACAATTTGGTCCTCAAAATTGGAACTCAATAGCAGAACATCTTCCAGGAAGATCAGGGAAAAGTTGTAGATTGAGGTGGTTTAACCAGCTAGATCCAAGAATAAACAGAAAGGCTTTCAGTGAGGAAGAAGAGGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCAGGTAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAGAAGTCATGTGTCTACAAAAGGAGAAAGCCCACATTTCAGATCCTGCCACCAAAGGATTTGGACTTGACCTTGCCAATGAATGGAAGCAGTGAATCAACCATTTCCAGCACCATCATTGATGAATCTGCCTCAACAGGAACTAACCTCTCCTTCACTCCCTCTTCAGCCAAACCAACTCCTCTGCCTTTTCACAACCCCTGTCCTGTTCAGAATCTCCAAGCCTTTGGTGCTCTAATGGGTTTATCTGGAGAAAGCGGAAGACTAGCCAGGGAAGTGGGGTTTGGTATGTATTTTGGTGCTTGGAAGGGTTCATTTGAGGCTGGACACAACATGGGAAGGCTAATTGGTGTGGATCACTGCTATTATTCAGAGTCAAACTCATCAGAAGTTTCAGTATGTGAGTCAGTTGCCACCAACAGCACTACCAATCTCTCAATTTCTAGAGAAAATGAAAACATGGGTCATAACAAGGCTAACATGATATTCATTGACTTTCTTGGAGTAGGAGCTGCATAA 1158 0.4404 MSTSLHFRNSGCGFSAEMNVFSSPPVPVLALQCSNTLGFMGGGTEAESSDMPFQKSNFSVIKHQEELEEEEEEEESFGVENKSLSLKPGEELEANSSSATGKIRETKLCARGHWRPVEDDKLKELVAQFGPQNWNSIAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVYKRRKPTFQILPPKDLDLTLPMNGSSESTISSTIIDESASTGTNLSFTPSSAKPTPLPFHNPCPVQNLQAFGALMGLSGESGRLAREVGFGMYFGAWKGSFEAGHNMGRLIGVDHCYYSESNSSEVSVCESVATNSTTNLSISRENENMGHNKANMIFIDFLGVGAA* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0578 385 PANTHER OS08G0435700 PROTEIN 63 384 - -
Pvu4g0578 385 CDD SANT 165 205 IPR001005 -
Pvu4g0578 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 157 IPR017930 -
Pvu4g0578 385 SMART sant 110 159 IPR001005 -
Pvu4g0578 385 SMART sant 162 210 IPR001005 -
Pvu4g0578 385 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Pvu4g0578 385 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Pvu4g0578 385 ProSiteProfiles Myb-like domain profile. 111 157 IPR001005 -
Pvu4g0578 385 Gene3D - 111 162 - -
Pvu4g0578 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 212 IPR017930 -
Pvu4g0578 385 Gene3D - 164 223 - -
Pvu4g0578 385 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Pvu4g0578 385 CDD SANT 114 155 IPR001005 -
Pvu4g0578 385 SUPERFAMILY Homeodomain-like 111 204 IPR009057 -
Pvu4g0578 385 PANTHER MYB PROTEIN-RELATED 63 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0578 Pvu-Chr4 6865813 6867929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0578 67 277 MYB Transcription Factor Family AT5G17800 51.613 9.42e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu4g0578 Myb_DNA-binding 5.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0578 K09422 - gmx:100791795 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1109 1 27428707 27431327 Pvu4g0578 4 6865813 6867929 PCT