Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0577 ATGAGTGACTCATTACACTTCAGGAATGGTGGTTGTGGGTTCAGTGCTGAAATGAATGTTTTTCCTTCACCTCCTGTTACTGTTATTGGTCTCCACTCTTTCAACATTTTAGGGGTGATGGGTCATGTTGAAGGCAAGAAATCTGAAAGTTCTGATATACCCTTTCAGATTTTGAACCCTTCTGTGATCCATGCCTCCCAGGAGGGAGAAGCATCTTTTGGGGTTGAAGCCATGAGCTTGTCTTTGAAGCCTGGTGAAGAGCTTGAAGCTGATAGTTATTCTGCTACAGGAAAAATTAGACACACTAAACTTTGTGCCAGAGGACATTGGAGACCAGCTGAAGATGTCAAACTTAAAGAGCTTGTTGCACAATTTGGAGCTCAAAATTGGAACTCAATAGCAGAACATCTTCCAGGAAGATCAGGGAAAAGTTGTAGATTGAGGTGGTTTAACCAGCTAGATCCAAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAGGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCAGGTAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAGAAGTCATGTGTCTACAAAAGGAGAAAGCCCACATTTCAGATCCTGCCACCAAAGGATTTGGACTTGACCTTGCCAATGAATGGAAGCAGTGAATCAACCATTTCCAGCACCATCATTGATGAATCTGCCTCAACAGGAACTAACCTCTCCTTCACTCCCTCTTCAGCCAAACCAACTCCTCTGCCTTTTCACAACCCCTGTCCTGTTCAGAATCTCCAAGCCTTTGGTGCTCTAATGGATTTATCTGGAGAAAGCAGGACAACAGCCAGAAATGGGAGTTTTAACAAGCATATTGGTGCTTGGAAAGGTTCATGTGAAGCTGGACACATGGGAAGGCTCATGGGTGTGGACCAATCCCATTGCTCAGATTCAAACTCATCAGAAATTTCAGTATCTGAGTCAGTTGCCACCAACAAGATTACCAATCTCTCAATGTATGAAAAAAGTGATAATAGGCCCAACATGTTATTCATTGACTTTCTTGGAGTAGGAGCTACATAA 1131 0.4315 MSDSLHFRNGGCGFSAEMNVFPSPPVTVIGLHSFNILGVMGHVEGKKSESSDIPFQILNPSVIHASQEGEASFGVEAMSLSLKPGEELEADSYSATGKIRHTKLCARGHWRPAEDVKLKELVAQFGAQNWNSIAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVYKRRKPTFQILPPKDLDLTLPMNGSSESTISSTIIDESASTGTNLSFTPSSAKPTPLPFHNPCPVQNLQAFGALMDLSGESRTTARNGSFNKHIGAWKGSCEAGHMGRLMGVDQSHCSDSNSSEISVSESVATNKITNLSMYEKSDNRPNMLFIDFLGVGAT* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0577 376 PANTHER MYB PROTEIN-RELATED 66 376 - -
Pvu4g0577 376 CDD SANT 161 201 IPR001005 -
Pvu4g0577 376 Gene3D - 160 219 - -
Pvu4g0577 376 ProSiteProfiles Myb-like domain profile. 107 153 IPR001005 -
Pvu4g0577 376 Gene3D - 107 158 - -
Pvu4g0577 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 208 IPR017930 -
Pvu4g0577 376 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Pvu4g0577 376 SMART sant 106 155 IPR001005 -
Pvu4g0577 376 SMART sant 158 206 IPR001005 -
Pvu4g0577 376 Pfam Myb-like DNA-binding domain 110 170 - -
Pvu4g0577 376 SUPERFAMILY Homeodomain-like 107 200 IPR009057 -
Pvu4g0577 376 CDD SANT 110 151 IPR001005 -
Pvu4g0577 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 153 IPR017930 -
Pvu4g0577 376 PANTHER OS08G0435700 PROTEIN 66 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0577 Pvu-Chr4 6821596 6823651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0577 102 376 MYB Transcription Factor Family AT5G17800 44.128 7.34e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu4g0577 Myb_DNA-bind_6 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0577 K09422 - gmx:100791795 360.533