Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0571 ATGGCGAGGAAGCGAAAACAGCCACCTCGTCCGGCGAAATCCGCAGAGCCCCCTCTCAAACAGCAACAACAACAACAGCCCCAATTGAATGTTGAAGCAGAGTATAAAGAAGAGGAACTATACGAAGAAGAAAAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGAAAGCGAAGAAATTGAAGAGGAATTAGCACCGAGCAATGAAACCTCCAAGGCCCCCTCCACGTCTTGCTCCTCTCCAAGCGACGACGAGGAGCCAATCCGGGACCTTCTAGAACCCCTCGGCAAGCATGAGATCGCGAAACTTCTCATGGAGGCCGCCTCCAAGCACCGCGACGTGGCGGAACGGATACGACGCACCGCCGACGCCGATCCCGCGCACCGCAAGATCTTTGTACATGGCCTCGGCTGGGACACCACCGTCGAAACCCTCACCGCCGCTTTTTCCTCCTACGGCGACATCGAGGACTGCAAGGCCGTTACGGACAAGGCCACCGGAAAGTCCAAGGGCTATGGCTTCGTCCTTTTCAAGACCCGTCGCGCTGCGCGGAACGCTCTTCGCCAGCCGCAGAAGAGGATCGGCAACCGCACTGCGGCTTGCCAGCTGGCGTCCGTGGGCCCAGTCCAGGCGACGATTTCGATGGCGCCCGGGGCTTCAGATTTCTCGCAGAGGAAGATCTACGTGAGCAATGTGAGTGCGGAATTGGACCCGCAGAGGCTTCTTTCGTTTTTTGCGCGGTTTGGGGAGATTGAGGAAGGACCTTTGGGGCTTGATAAGGTAACTGGGAAACCGAAGGGGTTCTGTTTGTTTGTTTATAAGAGTGTGGAGGGTGCAAAGCGGGCGTTGGAGGGGCCGCACAAGAAGTTTGAGGGGCATATTTTGCATTGCCAGAAGGCAATTGATGGTTCGAAGCAACAGCGAGTAGGGGTGGTGCAAGGTAGTTCTCATAGTGGTGGGTTTGTTGGTGTGGGGGCAGTGCCAATGACGGGGCACTTGATGGCTCCAGCCGGGCCAGCGGCAGGAGGAGATGTAGCAGGGACGGCAGTGCAGTCAGTTAATCCGGCAGTTGGGCAGGCACTGACGGCATTGCTGGCATCTCGGGGTGCCGGGTTGCAATTGAGTGGGTTGTTGGGGATTGGGTCACCGGGGACGAACACTAGCAGTTATGTTGGACAAGGGAGTGTGAATCATGGGGGTGTTGTTGTTGGGGGGTATGGGAATCAAGTAGGGCTGCCAAGTTCATATGCAAGCCAGCAGCAGGTGGGGATAAGTGGATCTGGAAGAGTGCAGCAGTATCATGGTGTGGGACAGTATGGTGGCGTTGTGCCTTACACGGGCCACTAG 1344 0.5618 MARKRKQPPRPAKSAEPPLKQQQQQQPQLNVEAEYKEEELYEEEKEEEEEVEEEESEEIEEELAPSNETSKAPSTSCSSPSDDEEPIRDLLEPLGKHEIAKLLMEAASKHRDVAERIRRTADADPAHRKIFVHGLGWDTTVETLTAAFSSYGDIEDCKAVTDKATGKSKGYGFVLFKTRRAARNALRQPQKRIGNRTAACQLASVGPVQATISMAPGASDFSQRKIYVSNVSAELDPQRLLSFFARFGEIEEGPLGLDKVTGKPKGFCLFVYKSVEGAKRALEGPHKKFEGHILHCQKAIDGSKQQRVGVVQGSSHSGGFVGVGAVPMTGHLMAPAGPAAGGDVAGTAVQSVNPAVGQALTALLASRGAGLQLSGLLGIGSPGTNTSSYVGQGSVNHGGVVVGGYGNQVGLPSSYASQQQVGISGSGRVQQYHGVGQYGGVVPYTGH* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0571 447 MobiDBLite consensus disorder prediction 17 31 - -
Pvu4g0571 447 Gene3D - 215 324 IPR012677 -
Pvu4g0571 447 SUPERFAMILY RNA-binding domain, RBD 120 207 IPR035979 GO:0003676
Pvu4g0571 447 Gene3D - 20 211 IPR012677 -
Pvu4g0571 447 Coils Coil 30 64 - -
Pvu4g0571 447 MobiDBLite consensus disorder prediction 1 87 - -
Pvu4g0571 447 SUPERFAMILY RNA-binding domain, RBD 217 319 IPR035979 GO:0003676
Pvu4g0571 447 CDD RRM_RBM24_RBM38_like 224 299 - -
Pvu4g0571 447 SMART rrm1_1 129 201 IPR000504 GO:0003723
Pvu4g0571 447 SMART rrm1_1 225 297 IPR000504 GO:0003723
Pvu4g0571 447 MobiDBLite consensus disorder prediction 36 63 - -
Pvu4g0571 447 MobiDBLite consensus disorder prediction 67 81 - -
Pvu4g0571 447 PANTHER UBP1-ASSOCIATED PROTEIN 2A 1 422 - -
Pvu4g0571 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 196 IPR000504 GO:0003723
Pvu4g0571 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 293 IPR000504 GO:0003723
Pvu4g0571 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 313 IPR000504 GO:0003723
Pvu4g0571 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 205 IPR000504 GO:0003723
Pvu4g0571 447 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0571 Pvu-Chr4 6778776 6780370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0571 220 299 C2H2 Transcription Factor Family AT2G19380 35.000 2.18e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0571 K12741 - cpap:110817215 391.734