Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0567 ATGGGGAGCAGAAAGGAAGAAGAGAAGAACGAGAAAATTATCAGAGGTCTCATGAAGCTTCCACCTAATCGAAGATGTATCAACTGCAACAGCTTGGGACCACAATATGTATGTACAAGTTTTTGGACTTTCATTTGCACCACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCCGTCTCGATGGCAAAGTTCACTTCACAAGAAGTCGATGCTCTTCAAAGTGGAGGTAACCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGACTTTCAAAGGCAGCGGTTGCCAGATAACAGCAATGTTGATAAAATAAGGGAATTTATAAGGAGTGTATATGTGGATGGAAGATATGCTGCAGTGAAGTCTTCAGAAAAGCCTCCAAGAGATGCACAGAGCCATGGGATTCATCAAGATGAGATTAGGCGCGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAGGATAGGAAGTATGGAAAACAAGCAGCTGTGCTTACCAGGAAGCCTGGTTCAGATAAAGCTCGATATGAAGGGAAGATTTCTAGTATTATTTATAGTCCTGGCCGCTTCAGTGATCATGCATATGATGACAGATTTGCAAATGAAGGATCTGGTCCAAGAATTTCTGACTTTTCTGTGTCTAGTGGTGGCGAACAATTCAAATCTGATGTTCAGTCTCCCAATTTCTATAAAGATATCAAGATTAGCAGTCCATCCTATCAAAGGCGTTCTGGTTCCAGTTCGAGTGAAGATGTGTGGTCCCAAGCAAGAAATGCATCTCTGGAAACTAATGTTAATGCCAAGAGAGATGCAGATGGAATTCTTCCTCCGCAGAGAACTGCATCTGCACAATCAGCAGACAACAGATTTTCGTCCTTGAGATCTTATAACTCTGGCAGTTTAGTTGATTTTTTCTCTGAACCAGTTCAACCTTCAGAACCACTTCAGAATAAAGCATTTGGCATTCCACGACCACCTGGTCCTACAAGATCTGTTAGCATGGACCTCTCCAAGGCACCACTGGAATCAGCAACAGCATACCACGCTCCAACAGTGGATCTGTTTCAATCATCTTTTTCATCTGCAGTTCCATTTTTCAATGAGAATCAACTTACTCAAGCATCCCAACTTGCATCTGTTGATTTTTTTGCCAATCTCTCTGAGGAGCCTTCTACTGTAAACTCAAATGAAAAGGCACTGGATTTATCTGTCCCTAAAAATGAAGGATGGGCAACTTTTGATGTGCCTCAGAGCACCTCATCTACAGCACAAGTGGAAATTCCAGCCACTGTACCCTCAAGTTCTAAATCTTTACAAGAAGGATTTGATCCATTTCCCACCTCAAATGCAAACACACAATGGCCATCTTTTGAATTTTCTAGTGTCGGTATACATTCTTCACTTACATCTAATTTGTGGCATGATGGTGTGTGGAATGGAGAAGAACAAGTTTCTGCTATGTCAACAAACACTCAACCATGGAATGCATTTGAAGATTCTGGTGGCCATCATCCTGTGGATGCCCTTAGTCAAGGATTACAATTTCACAATTGTCCCACAGCTGATAATCAAATTTTGGGATTAAGAGAGTCTGAGGGGTCCAAAAGTGATGGCGTTAAAGGCATAGCCCCTGTTGGTGGATTTGATAATCATGACATCCCATCGCTTGTCAGTGGCTCAGCATTTCCCCCACCCATGCTCCCTCCAATGGGAGACACTGAACCTATTGGAATGAAATGTAAATCAACTAATCCATTTGATTATCCTCATGAATCTGATGTAGATCACAACAATATGTTTCTTGATATGAGCTCTTTGCAAGATGCACTGCCAGATGCCCTGTTTCCAACCTCCTTCCATAGTGGTATAGCTGAATCTTGGCTTCCTAAAAACACAGTGACCCCTTATATTTCCTCTTCAGGAGAAGGTGGTTTGTCATTCATGGCTGTGCAATCACCTGGCTCTCAAATACAGAACATCCAGACACCAGAACCAGTTGCTTCATTTGGGGGAAATCCTTTTGCATAG 2058 0.4193 MGSRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTSFWTFICTTCSGIHREFTHRVKSVSMAKFTSQEVDALQSGGNQRAREIYLKNWDFQRQRLPDNSNVDKIREFIRSVYVDGRYAAVKSSEKPPRDAQSHGIHQDEIRRASSYHSYSQSPPYDYQYEDRKYGKQAAVLTRKPGSDKARYEGKISSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVSSGGEQFKSDVQSPNFYKDIKISSPSYQRRSGSSSSEDVWSQARNASLETNVNAKRDADGILPPQRTASAQSADNRFSSLRSYNSGSLVDFFSEPVQPSEPLQNKAFGIPRPPGPTRSVSMDLSKAPLESATAYHAPTVDLFQSSFSSAVPFFNENQLTQASQLASVDFFANLSEEPSTVNSNEKALDLSVPKNEGWATFDVPQSTSSTAQVEIPATVPSSSKSLQEGFDPFPTSNANTQWPSFEFSSVGIHSSLTSNLWHDGVWNGEEQVSAMSTNTQPWNAFEDSGGHHPVDALSQGLQFHNCPTADNQILGLRESEGSKSDGVKGIAPVGGFDNHDIPSLVSGSAFPPPMLPPMGDTEPIGMKCKSTNPFDYPHESDVDHNNMFLDMSSLQDALPDALFPTSFHSGIAESWLPKNTVTPYISSSGEGGLSFMAVQSPGSQIQNIQTPEPVASFGGNPFA* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0567 685 MobiDBLite consensus disorder prediction 124 162 - -
Pvu4g0567 685 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Pvu4g0567 685 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Pvu4g0567 685 MobiDBLite consensus disorder prediction 125 147 - -
Pvu4g0567 685 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 685 - -
Pvu4g0567 685 MobiDBLite consensus disorder prediction 245 297 - -
Pvu4g0567 685 MobiDBLite consensus disorder prediction 245 275 - -
Pvu4g0567 685 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Pvu4g0567 685 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Pvu4g0567 685 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Pvu4g0567 685 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Pvu4g0567 685 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Pvu4g0567 685 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Pvu4g0567 685 PANTHER ARFGAP/RECO-RELATED 1 685 IPR044820 GO:0005096
Pvu4g0567 685 CDD ArfGap_AGFG 11 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0567 Pvu-Chr4 6698779 6705552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0567 14 132 C2H2 Transcription Factor Family AT3G07940 32.558 1.14e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0567 K15044 - gmx:100788316 1125.92