Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0554 ATGGACAGGCTCATAAGGTTAGAGCCATCAAACACAGTCATAATCAGAGTAGAACCAGGCCAAAAGTGGCAAGGCAAAATCACCTTACACAACGTTATGCACACAATGCCAGTGGCCTTCTGGCTTCAACCCCTCATCAAATCCCGTTACTTAGTCAAACCCCACTCAGGTATCATCTCCCCCTTAGCTACACTCACCCTAGAAATCACCTATCATATAACCTCCACCATCACCCTCCCCCATTCCTTCCCCCACTCCAACGACTCTTTCCTCCTACACAGCGTCTTGGTCCCCGGCGCCGCCATCAGGGAACCCTCCTCCATGTTCGACGCCGTCCCCTCCGACTGGTTCAAGAAAAAGCAAGTCTTCATTGACAGCGGCATAAAGGTCATGTTTTTAGGGTCACACATTCTGGCCCAGTTGGTCTCGCTCGGGGAAAATAATGAGGTCAGGGAAGCCCTAGAGAGAAGCGACCCTTCATGGAGGATTGTGAACAGCACCGACCCACGTGGCAACACGTTGCTCCACTTGGCGATCGCGCAGGGAAGACCTGATCTCGTTCAACTGCTTCTGGAGTTCGAGGCTGATACTGAGGCAACGAACCGTTCTGGGTTGACCCCACTTGAGGCTGCAGCATCGTGTAACGAAACATTGATCGTGGAGCTTCTTCTGGCCCGCAGGGCCAACACGGAGCGAGCCGAATGGGCCGTGTTCGGGCCGATTCATCACGCGGCTAGAGGAGGACACGTGGAGGTTCTGAGACTGCTCTTGCTCAAAGGCGGCAAAGTGGACTCGCTCACGAAAGATGGCAACACTGCTTTGCACGTTGCGGTTGAGGAGCGTAGAAGAGACTGTGTTAGACTCCTTCTAGCCAACGGTGCCAGAACTGACCTTAAGAACACAACAGAAGGTGACACCCCTTTGCACATGGCAGCAGCAGCAGGAGACGAGAGCATGGTGAAGCTTCTCCTACAAAAGGGCCGTGCCAACAAAGACATTCGAAACGCGCAAGGCAAAACCGCCTACGACGTCGCAGTGGAGAACGGCCACGAGCGCCTCTTCGACGCCCTGAGCCTGGGCGACAAGCTGTGCGCGGCTGCAAAGAAAGGCGAAGTGAGAACCATCCAGAAGCTTCTAGAGAAGGGCGCGGACCTCAACGGGAGGGACCAGCACGGTTGGACCGCGCTACACCGAGCCTCGTTCAAAGGGCGAATGGACGTGGTGAAGGTTCTGGTGGAGAGAGGGGTGGAGGTGGACGCGAAGGACGAAGAGGGGTACACGGCACTGCACTGTGCGGCGGAGGCGGGGCATGTCGACGTGACGGAGTTTTTGGTGAAGAAAGGTGCGGATGTTGAGGCGAGGACCAGTAAGGGTGTAAACGCGTTGCAGATAACAGAGTCGTTGAAGTACGTGGGGATCACGAGGGTTCTTGTTAACGGTGGGGCTAGTAGGGAAAATTCTGATAAAGTGGCTGCGTTTGGTGCAGTTGCGTTTGGGAGTAAGGTAACGGAAGTGAAGAAGAGGAGGAGTGGTGAAAGACGTAATAACAGATTGTTGAATAATGGTGCTGGTTTTGGTCGTTCAGTGGCTCTGGCTGTGCTGTAA 1605 0.5452 MDRLIRLEPSNTVIIRVEPGQKWQGKITLHNVMHTMPVAFWLQPLIKSRYLVKPHSGIISPLATLTLEITYHITSTITLPHSFPHSNDSFLLHSVLVPGAAIREPSSMFDAVPSDWFKKKQVFIDSGIKVMFLGSHILAQLVSLGENNEVREALERSDPSWRIVNSTDPRGNTLLHLAIAQGRPDLVQLLLEFEADTEATNRSGLTPLEAAASCNETLIVELLLARRANTERAEWAVFGPIHHAARGGHVEVLRLLLLKGGKVDSLTKDGNTALHVAVEERRRDCVRLLLANGARTDLKNTTEGDTPLHMAAAAGDESMVKLLLQKGRANKDIRNAQGKTAYDVAVENGHERLFDALSLGDKLCAAAKKGEVRTIQKLLEKGADLNGRDQHGWTALHRASFKGRMDVVKVLVERGVEVDAKDEEGYTALHCAAEAGHVDVTEFLVKKGADVEARTSKGVNALQITESLKYVGITRVLVNGGASRENSDKVAAFGAVAFGSKVTEVKKRRSGERRNNRLLNNGAGFGRSVALAVL* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat profile. 424 456 IPR002110 GO:0005515
Pvu4g0554 534 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 534 - -
Pvu4g0554 534 Pfam Ankyrin repeats (many copies) 164 209 IPR002110 GO:0005515
Pvu4g0554 534 Pfam Ankyrin repeats (many copies) 300 345 IPR002110 GO:0005515
Pvu4g0554 534 Gene3D - 358 492 IPR036770 -
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat region circular profile. 303 327 - -
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Pvu4g0554 534 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 534 - -
Pvu4g0554 534 SUPERFAMILY Ankyrin repeat 164 489 IPR036770 -
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat profile. 269 301 IPR002110 GO:0005515
Pvu4g0554 534 Gene3D Immunoglobulins 1 129 IPR013783 -
Pvu4g0554 534 Gene3D - 303 357 IPR036770 -
Pvu4g0554 534 Gene3D - 274 302 IPR036770 -
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat profile. 240 268 IPR002110 GO:0005515
Pvu4g0554 534 Gene3D - 238 273 IPR036770 -
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat region circular profile. 391 423 - -
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat region circular profile. 424 454 - -
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat region circular profile. 269 300 - -
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat region circular profile. 170 202 - -
Pvu4g0554 534 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Pvu4g0554 534 SUPERFAMILY PapD-like 2 141 IPR008962 -
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat profile. 391 423 IPR002110 GO:0005515
Pvu4g0554 534 Gene3D - 130 236 IPR036770 -
Pvu4g0554 534 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 133 IPR000535 -
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat region circular profile. 240 264 - -
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat profile. 363 390 IPR002110 GO:0005515
Pvu4g0554 534 PRINTS Ankyrin repeat signature 304 319 IPR002110 GO:0005515
Pvu4g0554 534 PRINTS Ankyrin repeat signature 440 454 IPR002110 GO:0005515
Pvu4g0554 534 ProSiteProfiles Ankyrin repeat profile. 303 327 IPR002110 GO:0005515
Pvu4g0554 534 Pfam Ankyrin repeats (3 copies) 364 454 IPR002110 GO:0005515
Pvu4g0554 534 Pfam Ankyrin repeats (3 copies) 240 299 IPR002110 GO:0005515
Pvu4g0554 534 SMART ANK_2a 269 298 IPR002110 GO:0005515
Pvu4g0554 534 SMART ANK_2a 203 232 IPR002110 GO:0005515
Pvu4g0554 534 SMART ANK_2a 424 453 IPR002110 GO:0005515
Pvu4g0554 534 SMART ANK_2a 236 265 IPR002110 GO:0005515
Pvu4g0554 534 SMART ANK_2a 337 387 IPR002110 GO:0005515
Pvu4g0554 534 SMART ANK_2a 391 420 IPR002110 GO:0005515
Pvu4g0554 534 SMART ANK_2a 170 199 IPR002110 GO:0005515
Pvu4g0554 534 SMART ANK_2a 303 333 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0554 Pvu-Chr4 6254322 6256456 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0554 363 467 Ion Channels AT4G32500 31.429 3.04e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0554 - - gmx:100782444 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1182 1 31938316 31939884 Pvu4g0554 4 6254322 6256456 PCT