Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0550 ATGGATCATTACAAGGTTCTCGGCTTGCACCGAACCGCGAGCAAAGAGGAAATCAAAACCGCTTTCAAAACACTAGCGTTTCAGTTCCATCCGGACAAGCATTCCCAATCTCCGAGGGCGATTAGGGAAAACGCCACAATTCGATTCAAACAGGTATCGGAGGCCTACGAGGTCCTCATGGACGACCAAAAGCGCGCCGACTACAATTTCCGGCGGAGCTCGGGCGCCCGCGGCGGAAACAACCACTATTCTCAGTATAGCTACGGATACAGTAGGAGCGGGAGCGGGAACGAGTACAAACCTAGGTCTGGTGGCGGCGGCGGCTTAGCTTCCAATTTCGAAATGGCTCTTCGGATTTTGACGGCGCGGTCTTCACTGCTCTATCTCGGCTTCGCAGCGGCTATATTAGGTGGGATAGTTGTCATTGATTCAAGCGGAGAATCCTTGTGGAGAATGCAAAATTCTGGGAAATCTTTTGAAGATGCCATGAAGTCCGTTGAGAAAGCGAAAGCGTATAGAGAAGATAACATGAAGGAACGTCCTTGA 546 0.5073 MDHYKVLGLHRTASKEEIKTAFKTLAFQFHPDKHSQSPRAIRENATIRFKQVSEAYEVLMDDQKRADYNFRRSSGARGGNNHYSQYSYGYSRSGSGNEYKPRSGGGGGLASNFEMALRILTARSSLLYLGFAAAILGGIVVIDSSGESLWRMQNSGKSFEDAMKSVEKAKAYREDNMKERP* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0550 181 Pfam DnaJ domain 2 69 IPR001623 -
Pvu4g0550 181 CDD DnaJ 2 61 IPR001623 -
Pvu4g0550 181 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Pvu4g0550 181 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Pvu4g0550 181 Gene3D DnaJ domain 1 116 IPR036869 -
Pvu4g0550 181 SMART dnaj_3 1 64 IPR001623 -
Pvu4g0550 181 SUPERFAMILY Chaperone J-domain 1 98 IPR036869 -
Pvu4g0550 181 PANTHER CO-CHAPERONE PROTEIN DJLA 1 164 - -
Pvu4g0550 181 PANTHER CHAPERONE PROTEIN DNAJ 72 1 164 - -
Pvu4g0550 181 PRINTS DnaJ domain signature 4 22 IPR001623 -
Pvu4g0550 181 PRINTS DnaJ domain signature 22 37 IPR001623 -
Pvu4g0550 181 PRINTS DnaJ domain signature 44 64 IPR001623 -
Pvu4g0550 181 PRINTS DnaJ domain signature 64 83 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0550 Pvu-Chr4 6184322 6188770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0550 3 73 C2H2 Transcription Factor Family AT1G74250 40.845 2.23e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0550 - - gmx:100782769 295.434