Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0526 ATGTGTGGTGAAAGGGAAAGAAATGTGAGGGAGAATTTAGACGGAAGAAGAGAGTTTGGGAATGAACGAACAGGTTATTACAAGCTTTCATTGACGAATTATTTTATGATTGATTATTTTGTGATTGATCAGGTGTGCTGGAAATTTGAAGGAAAGAAATATGATATTGCGTTGAAGTTTAGAATACCTGTAGTGAACCACCAATGGATTGAGGACTGCATAAAGGAAGGAAGGCGTGTTCCAGAAGATTCTTATACCTTGCAGAGTGGACATGAAGTAGGGCGATTGTTACTGGAAGTTCCCCACACTGTTCGAGATAGTAGGTTGACAAAGAAAAAAATCGTCAGTGACAAGTTACATGATACTGGGTCTGAAAGGCAAGAAACTAACTTCGGTTCTGGAATTTCAAGAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAGGCATGATGAGTCAAGTTCATATTCGTCTAGACTGTCAAGGAAAGGAAAAAGGAACATCTGCAATGGAAAGGGAGACAGGACTGTAGCTGGACCTTCTCGTAAAGGAAGAAGACTTACCAGAAATCTTGTTGATGAAGTTGTGTTGGCTCCTTCAATTTTGGATTTAAGCCCAGATAATCCCCTTTTTAGAATGGATAGACTGCAAACAGAAGCTGAAGCTACCTCTAGCCTTTCTGGTTGTGTCAATAGTAACATTATTCTACAAAATAGTGAAGGACCTAATGCTGGATTAAGTAATGAAAGTAGAATAATCAATGGTGGTTCAGATGTTATTGACCAGATCAAAGATTCAAGTCATATATCTGCTCCTAGAAATTCAACTTTCTTTGTAGAAGATGCCCTACCTGTGCCACAAACATCAATAGATTTATGTTCCAGTGATGATGAAAAGTTCATGGACGGTGATCAGGTTGAAAATGGTGCTGGCTTGCCTACTTCATCCGAGATGTCATGCGTTATATGTTTCACAGATTTCAGCACAACTCGGGGGATTCTGCCGTGTGGACATCGATTTTGTTTTCCATGCATCCAGAGTTGGGTTGATCACAGGACTTCAATGAGAAAAATGTCAACCTGCCCTTTGTGCAAGGCAAGTTTTGTGATGATTAAGAAAGTCGAGCATGCAGCCACAGCTGATCAAAAAGTATACTCTCAGACAATCCCATGTAACCATTCATCCTCAGATATTTTTATCCCCATGGATCAAGAGTTACGGCATACTATCTTTGAGTCTTCACAGAGTGGAGCTTGTGTAATTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAGTTGTGATATTTGCCAAATTCGAAAGATCCATTCTTATTGCATGGACCCTCCTCTACGGCCATGGACATGCAATCATTGTAAGGAACTTAGGATGCTTTATCGCTCTAATCACTCCTATTAG 1419 0.401 MCGERERNVRENLDGRREFGNERTGYYKLSLTNYFMIDYFVIDQVCWKFEGKKYDIALKFRIPVVNHQWIEDCIKEGRRVPEDSYTLQSGHEVGRLLLEVPHTVRDSRLTKKKIVSDKLHDTGSERQETNFGSGISRTYVLEDSCLMKRHDESSSYSSRLSRKGKRNICNGKGDRTVAGPSRKGRRLTRNLVDEVVLAPSILDLSPDNPLFRMDRLQTEAEATSSLSGCVNSNIILQNSEGPNAGLSNESRIINGGSDVIDQIKDSSHISAPRNSTFFVEDALPVPQTSIDLCSSDDEKFMDGDQVENGAGLPTSSEMSCVICFTDFSTTRGILPCGHRFCFPCIQSWVDHRTSMRKMSTCPLCKASFVMIKKVEHAATADQKVYSQTIPCNHSSSDIFIPMDQELRHTIFESSQSGACVICRGREPEDLLESCDICQIRKIHSYCMDPPLRPWTCNHCKELRMLYRSNHSY* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0526 472 MobiDBLite consensus disorder prediction 152 185 - -
Pvu4g0526 472 ProSiteProfiles Zinc finger RING-type profile. 320 365 IPR001841 -
Pvu4g0526 472 Pfam Zinc finger, C3HC4 type (RING finger) 320 364 IPR018957 GO:0046872
Pvu4g0526 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 376 IPR013083 -
Pvu4g0526 472 Gene3D BRCT domain 38 92 IPR036420 -
Pvu4g0526 472 PANTHER F5A8.9 PROTEIN 139 467 - -
Pvu4g0526 472 PANTHER F5A8.9 PROTEIN 44 130 - -
Pvu4g0526 472 SUPERFAMILY BRCT domain 38 90 IPR036420 -
Pvu4g0526 472 ProSitePatterns Zinc finger RING-type signature. 336 345 IPR017907 -
Pvu4g0526 472 SMART ring_2 320 364 IPR001841 -
Pvu4g0526 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 471 IPR013083 -
Pvu4g0526 472 SUPERFAMILY FYVE/PHD zinc finger 415 462 IPR011011 -
Pvu4g0526 472 ProSiteProfiles BRCT domain profile. 38 87 IPR001357 -
Pvu4g0526 472 SUPERFAMILY RING/U-box 315 372 - -
Pvu4g0526 472 Pfam twin BRCT domain 45 69 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0526 Pvu-Chr4 5648399 5653031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0526 36 93 Core DNA Replication Machinery Family AT4G02110 42.373 4.03e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0526 - - vra:106765083 773.852