Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0516 ATGGATGATTTCAAGTCCATCATTTCCATGCCCACCGCCGCCGCCACCGCCGCCACAACCGTCGATAACATCTGGAATAAGATCGTCGCCGGTGCTCATCCACACCACCCCGCCGCTGCCGGAGACTACAATGGCGGTGCCGGAGACTACCGTGGCGCTAGCGCCCTGGAGTTCTACGAGGGCAGCCCCATGGAGAATTTATCTTCTTCTTCGTCTCTCCCTGTTTCTTTCTCTCTTCCTCTCCCTTTCCACGCCCAAGGCCCTTCCTCCGTAGAACCCTTTGGAATGGGCACTGCGTCCTCCAATTTGGTTCACAGAGGTAGGAGAAGGGTGGTGGAGGAACCCATGGATAAGGCCACGATTCAGAAGCAGAGGAGGATGATCAAGAATCGTGAGTCTGCAGCTAGGTCGCGGGAACGCAAGCAGGCTTACACAATGGAGCTGGAGTATAAGGTTCAACAGCTGGAGCAAGAGAATACCCACTTAGTCAATGAAGAGGCTGAGAATAGAAGGCAGAGGAGAAAGCAGCTGATGGAGACCATCATTCCAGTTGAGGTGATGCGCAAACCCAGAAAAAAATTTGGGAGACAAAATTCATTCTGA 603 0.5307 MDDFKSIISMPTAAATAATTVDNIWNKIVAGAHPHHPAAAGDYNGGAGDYRGASALEFYEGSPMENLSSSSSLPVSFSLPLPFHAQGPSSVEPFGMGTASSNLVHRGRRRVVEEPMDKATIQKQRRMIKNRESAARSRERKQAYTMELEYKVQQLEQENTHLVNEEAENRRQRRKQLMETIIPVEVMRKPRKKFGRQNSF* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0516 200 Pfam bZIP transcription factor 119 176 IPR004827 GO:0003700|GO:0006355
Pvu4g0516 200 Gene3D - 122 176 - -
Pvu4g0516 200 PANTHER OS05G0437700 PROTEIN 15 193 - -
Pvu4g0516 200 SMART brlzneu 118 182 IPR004827 GO:0003700|GO:0006355
Pvu4g0516 200 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 125 140 IPR004827 GO:0003700|GO:0006355
Pvu4g0516 200 SUPERFAMILY Leucine zipper domain 123 167 IPR046347 GO:0003700|GO:0006355
Pvu4g0516 200 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 120 172 IPR004827 GO:0003700|GO:0006355
Pvu4g0516 200 CDD bZIP_plant_BZIP46 122 183 - -
Pvu4g0516 200 Coils Coil 145 175 - -
Pvu4g0516 200 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 15 193 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0516 Pvu-Chr4 5502309 5505252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0516 20 200 bZIP Transcription Factor Family AT1G03970 40.104 3.90e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu4g0516 bZIP_1 2.9e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0516 K14432 - gmx:100101890 167.548