Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0506 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCTCCAGCACCTGGTCACGTGTCTGCGACACGTGCCGGTCAGCGCCATGCATAGTGTACTGCCATGCAGACTCAGCATACCTGTGTTCATCCTGTGATGCTCGTGTCCATGCAGCTAACCGCGTGGCCTCAAGGCACGAGCCGTTTCTTTGCAAAGTTGACGCAGCTTCTCTTTGTTCTTCGTGTGATGCTGAGATTCACTCAGCAAACCCTCTAGCCAGCCGCCACCACCGTTTCCCCGTTCTCCTCATCTTGGGTCCCCTCTTGGGAGAACCAGATCACGAACCGGAACACAGATTCGTGAACGTGGTGGAAGAGGAAGAGGAAGAGTTTTCTTATGAGTATGACGATGAGATTGAAGCTGCTTCGTGGTTGTTGCCACATCCTGTGAAAGGCAACGAAGAGGAGGAGAATGGTTTTATGTACGGTATTGAGTATTTGGAGAACCTTATGGATTGCAACTCGTGCGGTCACAATAATAACCAGTTTAGCAACGTTTTTCAGCACCAGCAGAACTACAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCTGCAACAATCGCAGCATTTTCAACCGGGTTTGGAGTTTGACTCATCAAAAGCTGGTTTCAGTTACGATGGTTCTCTTAGCCAAAGTGTATCAGTCTCATCAATGGAAGTTGGTGTAGTCCCAGAATCAACAATAAGTGATATCTCAGTGTCGTATTCAAAGTCACCAATAGGGACAAGTGAACTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCAATGGACAGAGAGGCCAGAGTCCTAAGATACAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACTAGACCACGCATCAAGGGTAGATTTGCAAAGAGAACAGATGTGGAAGCTGAAGTGGACCAAATGCTCTCCAAAACACTATTCAATGAAGTTGGTGGTACAATTTTCCATCTTTCCAGGAATGGAAAGAAAAGAAGTTATCAATAG 1062 0.4652 MLKEGTNNVGGSSSTWSRVCDTCRSAPCIVYCHADSAYLCSSCDARVHAANRVASRHEPFLCKVDAASLCSSCDAEIHSANPLASRHHRFPVLLILGPLLGEPDHEPEHRFVNVVEEEEEEFSYEYDDEIEAASWLLPHPVKGNEEEENGFMYGIEYLENLMDCNSCGHNNNQFSNVFQHQQNYNTVPQNYAVVPVQVLQQSQHFQPGLEFDSSKAGFSYDGSLSQSVSVSSMEVGVVPESTISDISVSYSKSPIGTSELFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSKTLFNEVGGTIFHLSRNGKKRSYQ* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0506 353 ProSiteProfiles Zinc finger B-box type profile. 15 58 IPR000315 GO:0008270
Pvu4g0506 353 CDD Bbox1_BBX-like 19 62 - -
Pvu4g0506 353 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 15 341 - -
Pvu4g0506 353 SMART bboxneu5 15 62 IPR000315 GO:0008270
Pvu4g0506 353 Pfam CCT motif 275 317 IPR010402 GO:0005515
Pvu4g0506 353 ProSiteProfiles CCT domain profile. 275 317 IPR010402 GO:0005515
Pvu4g0506 353 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 15 341 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0506 Pvu-Chr4 5393150 5395277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0506 1 340 C2C2-CO-like Transcription Factor Family AT3G02380 51.093 6.70e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pvu4g0506 CCT 1.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0506 - - gmx:100782635 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0506 4 5393150 5395277 Pvu8g0233 8 1954195 1956881 PCT