Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0502 ATGTCATTGCCCTTTCTTACAAACATTAACCGCGTTGAGATGCTTCTCAATGCATCCAGCACTGTTAGTGCATCGCATAAAAGATGGCACTCTGCATTCATGGCCATCTATTGCTCCCGAGCTATCATGTCACTCTCCACTCGCAACAAAACACACAGAATCAAAGCAAAAGTCTCACCTACACCAACACCACCACCATCTTTCGTCACGGTTGATTTGATTCCTAACCATTCCTTTGGTATTGGCCAAACAGCCCTCACTGACATTGTCAAAGAAAAAGACCTTAAGAACCTTGATGAAATTGGTGGAGTTGAAGGGGTGGCAACAGCCCTTGAAACCCATCTTGAGTATGGTATCAGAGGTGGTGATGATGATGGTGAAGACATCACACGTAGAACACAAGTGTTTGGTTCCAACACTTACCCAAAGCCACCTTCCAAAGGGTTCTTCCACTTTGTGGTGGAAGCCTTTAAGGATGTCACTATTCTCATCCTTTTGGCTTGTGCTGCTCTTTCCCTTGGCTTTGGAATCAAGGAGCATGGAATCAAAGAAGGTTGGTACGATGGTGGAAGCATCTTTGTTGCAGTGTTCATTGTGATTTCCTTGTCAGCTGTGAGCAACTTCAGACAGAACAGACAGTTTGACAAGCTGTCTCAGGTGAGCAATGACATACAAATTGAGGTGGTGAGAAGTGGGAGGCGACAACATGTGTCAATCTTTGAGATAGTGGTCGGTGATGTCATTTGCTTGAAGATTGGGGATCAAGTGCCAGCAGATGGGTTGTTCATAGAAGGGCATTCACTTAGAGTGGATGAATCAAGCATGACAGGAGAGAGTGATCATGTTGAGATTAGTAGGCAGCACCGTCCTTTTTTATTCTCAGGCACCAAGGTGGCTGAAGGGTATGCGAAGATGCTTGTTACCTCAGTTGGTATGAGCACAACATGGGGCCAAATGATGAGTTCAATAAGCCGAGATATTGATGAGCAAACTCCTTTGCAAGAGAGGCTAAACAAGCTCACATCGTCCATTGGAAAGGTTGGTTTGGCTGTGGCTTTTCTTGTCCTTGTTGTTTTGTTGGTTAGGTACTTCACAGGGAACACAAAGGATGACAATGGGGTCAGAGAGTTCAATGGAAGCAAGACCAAGTTTGATGATATAATGAATGCTGTTGTGGGAATTATTGCTGATGCAGTTACCATTGTTGTTGTTGCAATCCCTGAGGGTCTTCCATTGGCTGTGACTCTCACTCTGGCTTATTCAATGAAGAAAATGATGGCTGACCATGCAATGGTGAGAAAGCTCTCAGCATGTGAGACAATGGGTTCTGCCACAACAATTTGTACAGATAAGACTGGCACTCTCACACTCAATCAGATGAAAGTGACCAAATTCTGGCTTGGTCTAGAACCTGTGGCGGAAACTAAAAATGCTAACTCAAAGGTTGCTCCATTTGTTCTTCAACTTATCCAAGAAGGGGTGGCTCTAAACACAACTGGCAGTGTGCACAAGTCCAATAAATCAGGTTCTGAATTTGAGTTTTCAGGTAGTCCCACAGAAAAAGCTATCCTATCTTGGGCAGTTTTGGAGTTGAACATGGAGACGGAGGACTTGACAAAAGGCTGTTCCATCATTCAAGTGGAGACCTTCGACTCAAAGAAGAAAAAAAGTGGAGTTTTGTTGAGAAGGAAGGCAGACAACACGGTTAGTGCTCACTGGAAAGGAGCAGCAGAGATGGTACTAAAGATGTGCTCAAGATACTATGATGCTTCTGGCATTGTGAAAGATCTTGACAATGATAAAATGTTGAAGTTTGAACACATCATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATTGCTTTTGCCCATGTAGAAGTAGCCGAGGAAGAGCTTGGAGATGAAGACACAATGATGAAAGTGAAAGACAGCGGTTTAACATTGTTAGGACTTGTTGGGATTAAGGATCCATGTCGTCCAGGGGTGAAGAAGGCTGTGGAAGCTTGTCAAAATGCTGGTGTGAATGTAAAAATGATCACAGGAGACAATGTTTTCACTGCAAAAGCTATAGCAAGTGAATGTGGCATACTCAGGCCAAATCAGGACACAGTTGGAGCAGTGATTGAAGGAGAGGAATTTCGCAACTACACACCTGAAGAGAGGTTGGAGAAGGTGGACAATATCTGCGTGATGGCTAGATCTTCTCCTTTTGACAAACTTCTAATGGTTCAATGCCTGAAGCAAAAAGGTCATGTAGTTGCTGTCACTGGGGATGGCACAAACGATGCACCAGCACTGAAAGAAGCTGACATTGGACTCTCTATGGGAATTCAAGGGACTGAAGTGGCCAAAGAGAGCTCAGACATTGTTATATTGGATGACAATTTTGAATCTGTGGTCACTGTCTTAAGGTGGGGAAGGTGTGTTTACAACAACATCCAGAAGTTCATTCAGTTTCAATTGACAGTGAATGTTGCAGCACTTGCTATCAACTTTGTGGCAGCAGTGTCAGCTGGGGAAGTGCCACTCACAGCAGTACAATTGTTATGGGTGAACTTGATCATGGACACATTAGGTGCTTTGGCTCTTGCAACAGAAAAACCTACCAATGAATTGATGGACAAACCACCAGTGGGTAGAACAAAACCTCTCATCACCAATGTCATGTGGAGGAATCTATTGGCTCAAGCTTTGTACCAGATAGCAGTTTTGCTGACTCTTCAATTCAAAGGTGAGTCCATCTTTGGTGTGACATCAGGGGTAAATGACACATTGATTTTCAACACATTTGTTCTCTGCCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAGGAATGTATTCAAAGGCATACACAGGAGCAAGTTGTTCTTAGGCATTATTGGCATAACAATAATCCTTCAAGTTGTTATGGTTGAGTTTCTCAAGAAATTTGCTGATACAGAGAGGCTAAATTGGGGGCAATGGACTCTCTGCATTGGTCTAGCTGCAGTTTCATGGCCAATTGGTTGGGTTGTGAAGTTGATACCTGTCCCAGATAAACCATTGCTCAATTTTTTCAGAATCAAGAAATGA 3081 0.4346 MSLPFLTNINRVEMLLNASSTVSASHKRWHSAFMAIYCSRAIMSLSTRNKTHRIKAKVSPTPTPPPSFVTVDLIPNHSFGIGQTALTDIVKEKDLKNLDEIGGVEGVATALETHLEYGIRGGDDDGEDITRRTQVFGSNTYPKPPSKGFFHFVVEAFKDVTILILLACAALSLGFGIKEHGIKEGWYDGGSIFVAVFIVISLSAVSNFRQNRQFDKLSQVSNDIQIEVVRSGRRQHVSIFEIVVGDVICLKIGDQVPADGLFIEGHSLRVDESSMTGESDHVEISRQHRPFLFSGTKVAEGYAKMLVTSVGMSTTWGQMMSSISRDIDEQTPLQERLNKLTSSIGKVGLAVAFLVLVVLLVRYFTGNTKDDNGVREFNGSKTKFDDIMNAVVGIIADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADHAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPVAETKNANSKVAPFVLQLIQEGVALNTTGSVHKSNKSGSEFEFSGSPTEKAILSWAVLELNMETEDLTKGCSIIQVETFDSKKKKSGVLLRRKADNTVSAHWKGAAEMVLKMCSRYYDASGIVKDLDNDKMLKFEHIIQGMAASSLRCIAFAHVEVAEEELGDEDTMMKVKDSGLTLLGLVGIKDPCRPGVKKAVEACQNAGVNVKMITGDNVFTAKAIASECGILRPNQDTVGAVIEGEEFRNYTPEERLEKVDNICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFESVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTNELMDKPPVGRTKPLITNVMWRNLLAQALYQIAVLLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKRNVFKGIHRSKLFLGIIGITIILQVVMVEFLKKFADTERLNWGQWTLCIGLAAVSWPIGWVVKLIPVPDKPLLNFFRIKK* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0502 1026 SUPERFAMILY HAD-like 446 861 IPR036412 -
Pvu4g0502 1026 Pfam E1-E2 ATPase 225 426 - -
Pvu4g0502 1026 Gene3D - 445 801 IPR023214 -
Pvu4g0502 1026 PANTHER CALCIUM-TRANSPORTING ATPASE 12 1000 - -
Pvu4g0502 1026 Pfam Cation transporting ATPase, C-terminus 841 1011 IPR006068 -
Pvu4g0502 1026 PANTHER CATION TRANSPORTING ATPASE 12 1000 - -
Pvu4g0502 1026 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 454 662 IPR023299 GO:0000166
Pvu4g0502 1026 Pfam haloacid dehalogenase-like hydrolase 445 770 - -
Pvu4g0502 1026 PRINTS H+-transporting ATPase (proton pump) signature 605 623 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu4g0502 1026 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu4g0502 1026 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu4g0502 1026 SUPERFAMILY Calcium ATPase, transmembrane domain M 101 1013 IPR023298 -
Pvu4g0502 1026 Gene3D - 458 657 IPR023299 GO:0000166
Pvu4g0502 1026 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 730 837 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu4g0502 1026 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 391 475 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu4g0502 1026 SFLD p-type atpase 430 809 IPR044492 -
Pvu4g0502 1026 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 92 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Pvu4g0502 1026 Gene3D - 155 1010 - -
Pvu4g0502 1026 ProSitePatterns E1-E2 ATPases phosphorylation site. 450 456 IPR018303 -
Pvu4g0502 1026 SFLD Haloacid Dehalogenase 430 809 - -
Pvu4g0502 1026 SMART Cation_ATPase_N_a_2 100 177 IPR004014 -
Pvu4g0502 1026 Gene3D - 127 324 - -
Pvu4g0502 1026 SUPERFAMILY Calcium ATPase, transduction domain A 225 322 IPR008250 -
Pvu4g0502 1026 CDD P-type_ATPase_Ca_PMCA-like 129 889 - -
Pvu4g0502 1026 PRINTS P-type cation-transporting ATPase superfamily signature 271 285 - -
Pvu4g0502 1026 PRINTS P-type cation-transporting ATPase superfamily signature 448 462 - -
Pvu4g0502 1026 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Pvu4g0502 1026 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Pvu4g0502 1026 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Pvu4g0502 1026 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Pvu4g0502 1026 Pfam Cation transporter/ATPase, N-terminus 102 172 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0502 Pvu-Chr4 5244862 5248233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0502 12 1026 Primary Pumps ATPases AT3G22910 67.713 0.0 1326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0502 K01537 - gmx:100793918 1738.01