Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0500 ATGAGGAAACCTGATATCATGGGAAAAGACAAACTGAACACCTCCTCCTCCACCACCACCACCACCATTAACACCACCAACAACAGCACCAAGAGCAAGCTAAGGAAGGGGTTGTGGTCACCTGAGGAAGATGAGAAACTGATAAGGTACATGATCACTAAGGGACAAGGGTGCTGGAGTGACATTGCTAGGAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGTCTTCGTTGGATCAACTACTTGAGACCTGATCTCAAACGTGGTGCATTCTCACCCCAAGAGGAAGAACTCATCATTCATTTGCATTCCATTCTTGGAAATAGATGGTCTCAGATTGCTGCACGTCTCCCTGGTCGCACAGACAATGAAATAAAGAATTTTTGGAACTCAACACTGAAGAAAAGGTTGAAAATGAGCAACAACAACAACACCACTTCATCACCAAACAACAGTGACTCATCAGACCCTAGAGATGTCATGGGGGGGATAATGCCAATGAATGAGCATGACCTCATGACCATGTGCATGGACTCCTCCTCATCAACATCATCATCATCCATGCACTCCATGCAAGCCAACATGGCACTAACTGACCAATTTGACCCTTTTCCCTTGCTGTCCAACCGTTACGACATGACCACCGGTGCAGCCGGTTTCCTCGACAACATGGCTGCATGCTTAACCCAAGTTGGTATGGCAGATCATGATGATGGGGTTGTTCATGGTGATTATGGGGCATTGGAACCTAATAAAATGGGGTTAGAAAGCGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCAATATTGAGGACAATTCTACTACCCCAATTGATGTGAAAACCCATAACAACAACCACTTCAAGAACAGTTGCTTCAATAACACTGATCTTCATATTCAAACCTCCAACAACGTTGTTGCAGAGGACATGTTTGGGTTTGGAAATCATCATGGGCAAGGGGAAAACTTTAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAAGACATGTCCTATTTCCCTTCCCTTGATTTCCAAGTTTAA 1050 0.4476 MRKPDIMGKDKLNTSSSTTTTTINTTNNSTKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKMSNNNNTTSSPNNSDSSDPRDVMGGIMPMNEHDLMTMCMDSSSSTSSSSMHSMQANMALTDQFDPFPLLSNRYDMTTGAAGFLDNMAACLTQVGMADHDDGVVHGDYGALEPNKMGLESDFSLPPLESRSNIEDNSTTPIDVKTHNNNHFKNSCFNNTDLHIQTSNNVVAEDMFGFGNHHGQGENFRMGEWDFEGLMQDMSYFPSLDFQV* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0500 349 Gene3D - 33 89 - -
Pvu4g0500 349 PANTHER MYB DOMAIN PROTEIN 55 24 349 - -
Pvu4g0500 349 SMART sant 88 136 IPR001005 -
Pvu4g0500 349 SMART sant 35 85 IPR001005 -
Pvu4g0500 349 MobiDBLite consensus disorder prediction 10 33 - -
Pvu4g0500 349 PANTHER TRANSCRIPTION FACTOR MYB83 24 349 - -
Pvu4g0500 349 MobiDBLite consensus disorder prediction 1 33 - -
Pvu4g0500 349 MobiDBLite consensus disorder prediction 257 282 - -
Pvu4g0500 349 MobiDBLite consensus disorder prediction 263 282 - -
Pvu4g0500 349 CDD SANT 91 134 IPR001005 -
Pvu4g0500 349 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Pvu4g0500 349 MobiDBLite consensus disorder prediction 140 165 - -
Pvu4g0500 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Pvu4g0500 349 Pfam Myb-like DNA-binding domain 89 133 IPR001005 -
Pvu4g0500 349 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Pvu4g0500 349 Gene3D - 90 162 - -
Pvu4g0500 349 SUPERFAMILY Homeodomain-like 34 130 IPR009057 -
Pvu4g0500 349 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Pvu4g0500 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Pvu4g0500 349 CDD SANT 39 83 IPR001005 -
Pvu4g0500 349 MobiDBLite consensus disorder prediction 140 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0500 Pvu-Chr4 5233988 5237432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0500 1 349 MYB Transcription Factor Family AT3G08500 46.757 8.81e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu4g0500 Myb_DNA-binding 5.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0500 K09422 - gmx:100813660 515.768