Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0496 ATGTCTCGTCATCATCACCTTCACCACCATCATTCTCCCAATCCCTTCGCGTCCCTCTCCACTCACTCCGATTCCGATTCCGATTCGGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAGACTCGCTCGCGACTCTGTTCATGCGACGACACTGACATAAACCCTTTCTCCGACGCCGTCTGCGACGTCCATCGCTCCGAGCACGTGCTAGGGTTAGGGTTAGGGTTAGGGATTGACGTCGAAATTGATTCCCAAACGCAGGACAACGATGAGAATAATTACGATAGGGTTTTCAATTTCACGGTGGGGGATGGTTGGGGAGGGCTTAGAGTTGAAGGGTTCGGTTCGGATTCGGATGATTCGAATGGCGAGGAGGGTGGGGTTCGTGATGAGGGTGGTGGGTTTGACGATTTCGATGTTCGGTTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACACTGAATGAGGGTTTTGAATGGGAGGAAGTTGAGGAGAGGGTGAATGATAGGGAGGATTCGGGTTTGGTGGTTGATGAAGTTGAAATTGAGGATGATGATGACGGTGATTCGGTGGGGTTTACTAATGCCGAGGAGGAGGAGGAGGAGGAAGATGGAGGTGAAGAGGCGCTGAGGTACCTTGAGTGGGAGATTCTCTTGGCGGTTAACAATTCGGAGAGGAATGTTAACAATGGTGGTGGTTTGGAGCATGAGGGCATTGCTGGTGCTGCTGATTTGCTGACAATCCAAGATGGTTATGTGTATGCGGCGGAGTATGATGTTTTATTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGAAGTCCTCCCGCTGCGAAGAGTGTTGTGGAGAGTCTTCCATTGGTGGAGTTGTCGAAGGAGGAGCTGTTGCAGGGGAAGAACTTGGCCTGCGCCATTTGCAAGGATGAGATTTTGTTGGAGGAGAAGGTCAGGAGGCTGCCTTGCTCTCATTGTTACCATGGGGACTGCATTTTGCCATGGTTGGAAATTCGCAACACATGCCCAGTTTGTCGGTTTGAGCTTCCCACAGATGATCCGGACTATGAGCAGAGGAAGGTCCACAGGGCTGCTCATGATCTGTTGGAGCTTGCAACAGCAGGGATGCAATTTTGA 1140 0.5105 MSRHHHLHHHHSPNPFASLSTHSDSDSDSDSVSCFVTDLFETRSRLCSCDDTDINPFSDAVCDVHRSEHVLGLGLGLGIDVEIDSQTQDNDENNYDRVFNFTVGDGWGGLRVEGFGSDSDDSNGEEGGVRDEGGGFDDFDVRLCWDSLCLEDQRTLNEGFEWEEVEERVNDREDSGLVVDEVEIEDDDDGDSVGFTNAEEEEEEEDGGEEALRYLEWEILLAVNNSERNVNNGGGLEHEGIAGAADLLTIQDGYVYAAEYDVLFGQFLENESALKGSPPAAKSVVESLPLVELSKEELLQGKNLACAICKDEILLEEKVRRLPCSHCYHGDCILPWLEIRNTCPVCRFELPTDDPDYEQRKVHRAAHDLLELATAGMQF* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0496 379 CDD RING-H2_RNF126_like 306 347 - -
Pvu4g0496 379 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 8 379 - -
Pvu4g0496 379 Pfam Ring finger domain 305 347 IPR001841 -
Pvu4g0496 379 SUPERFAMILY RING/U-box 293 354 - -
Pvu4g0496 379 MobiDBLite consensus disorder prediction 184 209 - -
Pvu4g0496 379 MobiDBLite consensus disorder prediction 112 133 - -
Pvu4g0496 379 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 8 379 - -
Pvu4g0496 379 MobiDBLite consensus disorder prediction 1 23 - -
Pvu4g0496 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 353 IPR013083 -
Pvu4g0496 379 SMART ring_2 306 346 IPR001841 -
Pvu4g0496 379 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0496 Pvu-Chr4 5164955 5166640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0496 109 361 C3H Transcription Factor Family AT3G02340 40.000 2.65e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0496 - - vun:114182357 614.764