Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0458 ATGTTGGCGTGCGCATGTAAGGAAGGTGACCCCACAACATCAAACTATCTTCACTTTAGAACTGTTTTAGCACACCACAAATATAGAAAGATACCATGCTATTATATACCCCAATTCATCACGCATTCCACCCACTTTCTCTTCTCCTTTCATCTTTTTTTTTCCTTCCTTAGTTTCAAGATGGGGAGAGGGAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAGCCGCCAAGTCACCTTCTCCAAAAGAAGAACCGGTCTGCGCAAGAAAGCCAATGAAATCTCTGTGCTCTGTGATGCTCAAGTGGCACTGATTGTCTTCAATGCCAAAGGGAAGCTCTTCGAGTATTCCTCTGAATCCAGGTTCGTTATTTAA 378 0.4339 MLACACKEGDPTTSNYLHFRTVLAHHKYRKIPCYYIPQFITHSTHFLFSFHLFFSFLSFKMGRGRVQLKQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSSESRFVI* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0458 125 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 71 117 IPR002100 GO:0003677|GO:0046983
Pvu4g0458 125 SMART madsneu2 61 120 IPR002100 GO:0003677|GO:0046983
Pvu4g0458 125 Gene3D - 73 124 IPR036879 GO:0003677|GO:0046983
Pvu4g0458 125 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 61 121 - -
Pvu4g0458 125 PANTHER MADS BOX PROTEIN 61 121 - -
Pvu4g0458 125 CDD MADS_MEF2_like 62 121 IPR033896 GO:0000977|GO:0045944
Pvu4g0458 125 PRINTS MADS domain signature 63 83 IPR002100 GO:0003677|GO:0046983
Pvu4g0458 125 PRINTS MADS domain signature 83 98 IPR002100 GO:0003677|GO:0046983
Pvu4g0458 125 PRINTS MADS domain signature 98 119 IPR002100 GO:0003677|GO:0046983
Pvu4g0458 125 ProSiteProfiles MADS-box domain profile. 61 121 IPR002100 GO:0003677|GO:0046983
Pvu4g0458 125 SUPERFAMILY SRF-like 62 121 IPR036879 GO:0003677|GO:0046983
Pvu4g0458 125 ProSitePatterns MADS-box domain signature. 63 117 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0458 Pvu-Chr4 4785559 4786254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0458 61 121 MADS-box Gene Family AT1G26310 85.246 2.65e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu4g0458 SRF-TF 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0458 K09264 - gmx:100820188 119.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0458 4 4785559 4786254 Pvu8g0284 8 2299894 2307811 PCT