Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0448 ATGAGGCTTGTCATCTCAGCTCTTTGTGTTCTTGTGTTTTTCTCTTGTGCAGGTGCTTATGATCCTTTGGATCCAAACGGAAACATAACAATCAAATGGGATGTCATGTCTTGGACACCAGATGGCTATGTGGCTGTGGTAACAGTTCATAATTTTCAAATGTTTCGGCACATCATGAATCCTGGATGGACCTTGGGATGGACATGGGCCAAGAAAGAAGTGATTTGGTCCATGGTAGGAGCTCAAACCACAGAGCAAGGAGATTGCTCTAAGTTCAAAGGCAGCATACCTCATTGCTGCAAGAAAACTCCCACAGTTGTAGATCTACTCCCTGGTGTTCCTTACAACCAGCAATTCTCAAACTGCTGTAAGGGTGGAGTGGTGGCTGCATGGGGCCAAGATCCTTCACAAGCTATCTCATCCTTCCAAGTCAGTGTAGGCCAAGCTGGTACCACAAACAAGACAGTTAAACTCCCCAAGAATTTCACTCTCTTGGCTCCTGGACCAGGCTATTCCTGTGGCCCTGCCAAGATTGTTCCTTCCACCACTTTCCTTACTCCTGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACCTGCACATACTCACAGTTCCTGGCAAGAAAGAATCCAACTTGCTGTGTATCTTTGTCATCCTTCTATAACGAAACCATTACCCCTTGTCCCTCTTGTGCCTGTGGCTGCCACAACAAGAAGAATTGTGTCAAGAGTGAGTCCAAAATTCTCCGCATGGTGGGTGTTCATTCTCCCAAGAAAGACAATGAACCATTGCTGCAGTGCACTCATCACATGTGTCCAATCAGGGTTCACTGGCATGTCAAGGTTAACTATAAGGACTATTGGAGAGTCAAGATTACCATTACAAACTTCAATTACAGGATGAATCACTCGCTCTGGTCTCTTGCTGTTCAGCATCCAAATCTTAACAATCTAACCCAAGTTTTCAGTTTTAATTACAAGCCTCTTCTGCCCTATGCTTCCATAAATGACACTGGCATGTTCTATGGCACGAAATACTTCAATGATCTTCTAATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAGTTGCTTCTTCAGAAGGACAAGGATACATTCACATTCAAGCAGGGGTGGGCTTTTCCTCGCAAGATCTACTTTAATGGCGATGAATGCATGATGCCACAACCTGACACATACCCATTTCTACCTAACTCAGCACCTCCTAGTCTAATTACCTCCCCAGCATCTATTTTCTTACTGCTTTTCTTTTTAGCAGTTTGGTGA 1296 0.4452 MRLVISALCVLVFFSCAGAYDPLDPNGNITIKWDVMSWTPDGYVAVVTVHNFQMFRHIMNPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGSIPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSQAISSFQVSVGQAGTTNKTVKLPKNFTLLAPGPGYSCGPAKIVPSTTFLTPDKRRKTQALMTWNVTCTYSQFLARKNPTCCVSLSSFYNETITPCPSCACGCHNKKNCVKSESKILRMVGVHSPKKDNEPLLQCTHHMCPIRVHWHVKVNYKDYWRVKITITNFNYRMNHSLWSLAVQHPNLNNLTQVFSFNYKPLLPYASINDTGMFYGTKYFNDLLMEAGPTGNVQSELLLQKDKDTFTFKQGWAFPRKIYFNGDECMMPQPDTYPFLPNSAPPSLITSPASIFLLLFFLAVW* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0448 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Pvu4g0448 431 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Pvu4g0448 431 PANTHER PROTEIN COBRA 4 429 IPR006918 GO:0010215|GO:0031225
Pvu4g0448 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0031225
Pvu4g0448 431 PANTHER COBRA-LIKE PROTEIN 4 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0448 Pvu-Chr4 4636908 4639503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0448 1 427 COBRA Gene Family AT3G29810 66.515 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0448 - - gmx:100798678 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0448 4 4636908 4639503 Pvu8g0297 8 2408631 2412334 PCT
Pvu8g0296 8 2406210 2408577 Pvu4g0448 4 4636908 4639503 PCT