Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0411 ATGATCAATAGTAGAAAAGAAGCAGACTTTCCACTAAAACAGGAAGGTCTTTCTTCAAGTGATCATGAAAAGGCAAAGGCTTCATCATCCTCCCAATGGCTGAAACTGAAGGATCCAAGGATTGTTCGTGTGTCTCGAGCCTTTGGAGGAAAAGACAGGCACAGCAAGGTGTGCACAGTGAGAGGACTAAGAGATAGGAGGGTGAGGCTTTCAGTCCCAACAGCAATTCATCTCTATGACCTCCAAGATAGGCTTGGACTCAGTCAACCTAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCCAAGCATGAAATTGATGAACTGCCACCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCATCCATCTCTTGTTGCTTGCAATGAAGTTAACACCTCTCCTGAAGGTTCAGGCCAAAACAGCAACACTTTATGGAAACCAAAGTCAGGAGAAATTGTCAGTGATAAACCAAATTGGATAAACAGAAGTGAAGATGAGAACAATGCTACCAAAACTAATAATAATAATAGTAATGATTGTGATAATAAACACTGTCATGGTGCACATGTTTTTCAAAATAATCTCTTACCAAGACCAAACCATCCTTCTTTTCTGGGCTTGATGAACACCATGCCATCACTTGGTTACCAATGGGAGCCTAATTCAGGTGATGTTCCTCAATTGGGAAACCATGGATTTTTCAATCAAACGGATATACACAGCATTAATGTAGTTCCAATCTCATCAACTTTGGTATCAACTGGGAGTACTAGTCCTCAAATTTTGGTGTGTCCTTCTGGAGCAACACAGCCATATTTCTCTTCCCATGTTGCAGCAATGGAGATGAATGCAAGACAAATCAACCACTATCAGATGCTGACTTCAGGTTCTCAAAATCTCTTGGCAAATTCTCTCACTCCATCACAGCAACTCATGAGTAGCCAATCTGGGAAAGTGCCATTCAGCTTGGTTAGGCCTAAACTTTTTCATTCTCCTAACAGCACTGAAAGCCATCCCTCTAAAGACCAGGATTTTCCTTCCAAGTGA 1053 0.4179 MINSRKEADFPLKQEGLSSSDHEKAKASSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTLGYHPSLVACNEVNTSPEGSGQNSNTLWKPKSGEIVSDKPNWINRSEDENNATKTNNNNSNDCDNKHCHGAHVFQNNLLPRPNHPSFLGLMNTMPSLGYQWEPNSGDVPQLGNHGFFNQTDIHSINVVPISSTLVSTGSTSPQILVCPSGATQPYFSSHVAAMEMNARQINHYQMLTSGSQNLLANSLTPSQQLMSSQSGKVPFSLVRPKLFHSPNSTESHPSKDQDFPSK* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0411 350 Pfam TCP family transcription factor 50 187 IPR017887 -
Pvu4g0411 350 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 346 IPR005333 GO:0003700
Pvu4g0411 350 MobiDBLite consensus disorder prediction 157 177 - -
Pvu4g0411 350 MobiDBLite consensus disorder prediction 1 30 - -
Pvu4g0411 350 MobiDBLite consensus disorder prediction 329 350 - -
Pvu4g0411 350 ProSiteProfiles TCP domain profile. 50 108 IPR017887 -
Pvu4g0411 350 MobiDBLite consensus disorder prediction 1 22 - -
Pvu4g0411 350 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 1 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0411 Pvu-Chr4 4165406 4168171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0411 33 123 TCP Transcription Factor Family AT3G02150 82.418 6.05e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu4g0411 TCP 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0411 - - aprc:113867214 500.36