Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0410 ATGTTTTCTTCTTCTGCTCATTGCAGTTCAGTGATCAAATGGAATTCCCCAGTGCCGTTTCTCTTCCTCGTCTTCGTGCTTCTCTTCTCGTTGCGAAGCGATGCCGTATTGGCCGATTCAGACGAATCCGTACTCCTCCGTCTGAAGGCATCGTTCTCCGACCCCGCCGACGTTCTCTCCACATGGACCTCCGCTGCCGGCCCTGACTCTGGATACTGCTCCTGGTATGGCGTCCTCTGCAACGCGAACTCCCGGGTTGTCGCCATCAACGTCACCGGAAAAGGCAACAACCGAACCTCTCACCTGTGCGCTGGTTTCTCTCAATTCCCCCTTTACGGATTCGGAGTTCGGCGAACGTGCGAAGGTAGTAAAGGCTCTCTCTTTGGAAACTTTTCTTCTTTTAATTTCATCAGTGGGCTCACGGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGTGAAATCCCCAAAGCGATTTGGGGCATGGAAAAGCTAGAGGTTCTCGATTTAGAAGGAAATTTGGTAAGTGGATATCTTCCCTTGAGAATTAATGGCTTGAGGAAGTTGAGGGTTCTGAATCTTGGGTTTAATAGGATTGTAGGAGAGATTCCTTTTTCAATTTCTTCTCTTGAGAGTTTGGAGGTTTTGAATTTGGCTGTTAATGAATTGAATGGTTCTGTGCCTGGTTTTGTTGGGAGGCTTAGAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCGCGAGAGATTGGGGATAATTGTTGGAAGCTTGAGCATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGGATTCCTGGGAGTTTGGGGAATTGTGGGAGGTTGAGGACGCTTTTACTGTATTCCAATTTACTAGAAGAGGGTATTCCTGGTGAGCTTGGGAAGCTTAAGAGCCTTGAGGTGTTGGATGTTTCCAGGAACACTCTCAGTGGTTCTGTGCCAAGAGAGCTTGGGAATTGCTCGGATTTGTCAGTCCTGGTGCTGTCAAATCTCTTTGATCCACGTGGGGATGTTGCCGGAGATTTTGGGAAATTGGGTTCTGTAAATGATGAGCTGAACTATTTTGAAGGGTCGATGCCTGCGGAGGTTTTGTCGCTTCCGAAGCTGAGGATATTGTGGGCTCCCATGGTGAATTTGGAAGGCAGTTTTCAGGCAAGTTGGGGTCGTTGTCAGAGCTTGGAAATGGTCAATTTGGCTCAGAATTTTTTCAGTGGGGAGTTTCCGAACCAGCTTGGTGTCTGCGAGAGACTGTATTTTCTTGATTTAAGCGGAAACAACCTTACTGGGGTTCTTTCTGAAGGACTTCGCGTTCCCTGTATGAGCACGTTTGATGTTAGCGGGAACATGTTATCTGGTTCAATTCCTAATTTCTCCAATACTGTTTGTCCCCCTGAACCTTCTTGGAATGGAGACCTGTTTGAAGATGGCAATGTTTCTCCACCATATGCGTCCTTTTTTTCGTCAAAGGTTCAGGAGAATTCACTTTTCACAGCAATGGGGGGAGATGGTATTTCAGTAGTTCACAACTTTGGTCAAAACAACTTCAATGGCATTCTGTCTTTACCTATGGCACGTGACAGGCTGGGGAAACAGAGCAGTTACACATTTCTGGTTGGTGAAAATAATCTTACTGAACCATTTCCTACATATTTATTTGAGAAATGCCATGGATTAGATGCATTGCTTCTAAATGTCAGTTATAATAGGATATCTGGCCATATTCCTTCCAGTTTCAATGGGATATGCAGATCATTGAAACTTTTGGATGTGTCTGGAAATCAGCTTGCAGGATCAATTCCTGTTGATTTAGGGAATATGGTCTCCCTTGCATCGCTGAACCTCAGTAGGAATCAGTTAGAAGGTCAGATTCCCACCAGCCTTGGCCAGATAAAGAATCTGAAGTTTCTTTCTTTGGCTGGTAATAAGTTAAATGGCTCAATTCCGACCAGCCTGGGGCAGTTGTACTCTTTGGAGATCTTGGACCTTTCTTCAAACTATCTTACTGGTGAGATTCCGAAGGCTATTGAGAACATGAGAAACCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCACATTCCTGATGGCTTGGCATATGTCACTACACTCTCAGCATTCAATGTGTCTTTCAACAACTTATCTGGATCGTTGCCTTCAAATAGTGGCTTGATTAAATGCAGCAGTGCTGTTGGGAATCCGTATCTAAGCCCCTGCCGAGGAGTTTCTCTATCTGTGCCATCAGGAAGTCAACTAGGGCCTATTGATGGCAACCCTTATAATTCAGAATCAGAACAAGCTACTGGCAAGGAGAATGGGAATGGCTTGAGCTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTTTTTCAGTTCTTATAGCCCTGATTGTTCTATTCTTTTACACTCGGAAGTGGAAGCCTAGGTCCAGGGTTGTGGGTTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTCCCATTGACGTTTGAAACTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGTATTGGGAGTGGAGGTTTTGGGGCAACATACAAGGCAGAGGTATCACCAGGAATTCTGGTGGCAGTCAAACGTTTAGCAGTTGGACGTTTCCAAGGTGTTCAACAGTTCCATGCTGAAACCAAGACCCTTGGAAGGCTTCATCATCCAAATCTTGTCACTCTGATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCTGGTGGGAATCTTGAAAAGTTCATCCAGGAGAGGTCCACAAGGGTTGTAGATTGGAGGATTCTTCACAAGATTGCATTGGACATAGCCCGTGCACTGGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGTGATGTCAAGCCCAGCAACATCTTGTTGGATGATGATTTCAATGCTTATCTATCGGACTTTGGATTGGCTAGACTTCTGGGAACTTCAGAGACACATGCAACCACTGGTGTAGCAGGAACATTTGGGTATGTTGCTCCAGAATATGCGATGACTTGCCGTGTTTCTGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTAATTTTGGAAATGGGTTCAACATAGTGGCATGGGCATGCATGCTACTGAAGCAAGGAAGGGCAAATGAGTTTTTCACTGCCGGGTTATGGGAAGCAGGACCTGGAGATGATTTGGTAGAGGTGCTTCACTTGGCAATTGTGTGTACTGTTGACTCTCTCTCTACCAGACCTACAATGAAACAAGTTGTCAGAAGGCTTAAGCAACTTCAACCTCCATCATGCTAG 3402 0.4515 MFSSSAHCSSVIKWNSPVPFLFLVFVLLFSLRSDAVLADSDESVLLRLKASFSDPADVLSTWTSAAGPDSGYCSWYGVLCNANSRVVAINVTGKGNNRTSHLCAGFSQFPLYGFGVRRTCEGSKGSLFGNFSSFNFISGLTELRVLSLPFNALEGEIPKAIWGMEKLEVLDLEGNLVSGYLPLRINGLRKLRVLNLGFNRIVGEIPFSISSLESLEVLNLAVNELNGSVPGFVGRLRGVYLSFNQFSGVVPREIGDNCWKLEHLDLSGNSLVQGIPGSLGNCGRLRTLLLYSNLLEEGIPGELGKLKSLEVLDVSRNTLSGSVPRELGNCSDLSVLVLSNLFDPRGDVAGDFGKLGSVNDELNYFEGSMPAEVLSLPKLRILWAPMVNLEGSFQASWGRCQSLEMVNLAQNFFSGEFPNQLGVCERLYFLDLSGNNLTGVLSEGLRVPCMSTFDVSGNMLSGSIPNFSNTVCPPEPSWNGDLFEDGNVSPPYASFFSSKVQENSLFTAMGGDGISVVHNFGQNNFNGILSLPMARDRLGKQSSYTFLVGENNLTEPFPTYLFEKCHGLDALLLNVSYNRISGHIPSSFNGICRSLKLLDVSGNQLAGSIPVDLGNMVSLASLNLSRNQLEGQIPTSLGQIKNLKFLSLAGNKLNGSIPTSLGQLYSLEILDLSSNYLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAYVTTLSAFNVSFNNLSGSLPSNSGLIKCSSAVGNPYLSPCRGVSLSVPSGSQLGPIDGNPYNSESEQATGKENGNGLSSIEIASITSASAIFSVLIALIVLFFYTRKWKPRSRVVGSTRKEVTVFTDIGVPLTFETVVQATGNFNAGNCIGSGGFGATYKAEVSPGILVAVKRLAVGRFQGVQQFHAETKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRVVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSNFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGDDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSC* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0410 1133 SMART serkin_6 854 1132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0410 1133 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 20 1132 - -
Pvu4g0410 1133 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 20 1132 - -
Pvu4g0410 1133 Pfam Leucine Rich Repeat 666 688 IPR001611 GO:0005515
Pvu4g0410 1133 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515
Pvu4g0410 1133 Pfam Protein kinase domain 857 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0410 1133 SUPERFAMILY L domain-like 40 341 - -
Pvu4g0410 1133 Gene3D Ribonuclease Inhibitor 237 342 IPR032675 -
Pvu4g0410 1133 Gene3D Ribonuclease Inhibitor 347 477 IPR032675 -
Pvu4g0410 1133 Gene3D Ribonuclease Inhibitor 512 756 IPR032675 -
Pvu4g0410 1133 SMART LRR_typ_2 306 330 IPR003591 -
Pvu4g0410 1133 SMART LRR_typ_2 688 712 IPR003591 -
Pvu4g0410 1133 SMART LRR_typ_2 140 164 IPR003591 -
Pvu4g0410 1133 SMART LRR_typ_2 188 212 IPR003591 -
Pvu4g0410 1133 SMART LRR_typ_2 260 282 IPR003591 -
Pvu4g0410 1133 SMART LRR_typ_2 664 687 IPR003591 -
Pvu4g0410 1133 SMART LRR_typ_2 616 640 IPR003591 -
Pvu4g0410 1133 Gene3D Phosphorylase Kinase; domain 1 817 929 - -
Pvu4g0410 1133 SUPERFAMILY Protein kinase-like (PK-like) 836 1125 IPR011009 -
Pvu4g0410 1133 PRINTS Leucine-rich repeat signature 427 440 - -
Pvu4g0410 1133 PRINTS Leucine-rich repeat signature 664 677 - -
Pvu4g0410 1133 Pfam Leucine rich repeat N-terminal domain 38 81 IPR013210 -
Pvu4g0410 1133 Gene3D Transferase(Phosphotransferase) domain 1 930 1130 - -
Pvu4g0410 1133 MobiDBLite consensus disorder prediction 764 783 - -
Pvu4g0410 1133 SUPERFAMILY L domain-like 301 467 - -
Pvu4g0410 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 974 986 IPR008271 GO:0004672|GO:0006468
Pvu4g0410 1133 CDD STKc_IRAK 860 1128 - -
Pvu4g0410 1133 ProSitePatterns Protein kinases ATP-binding region signature. 860 882 IPR017441 GO:0005524
Pvu4g0410 1133 Gene3D Ribonuclease Inhibitor 37 236 IPR032675 -
Pvu4g0410 1133 SUPERFAMILY L domain-like 550 732 - -
Pvu4g0410 1133 Pfam Leucine rich repeat 573 629 IPR001611 GO:0005515
Pvu4g0410 1133 ProSiteProfiles Protein kinase domain profile. 854 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0410 Pvu-Chr4 4149948 4153349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0410 35 1133 Receptor kinase-like Gene Family AT3G02130 63.434 0.0 1324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Pvu4g0410 Pkinase 5.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0410 - - vra:106772082 1890.16