Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0409 ATGCAAAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGGGAAATTCCCGAAGCAATTTGGGGCATGGAAAAGCTAGAGGTTCTCGATTTAGAAGGGAACTTGATAAGTGGCTATCTTCCCTTGAGAATTAATGGTTTGAGGAAGTTGAGGGTTCTGAATCTTGGGTTTAATAGGATTATTGGGGAGGTGCCTAGTTCAATTGCGTCTCTTGAGAGTTTGGAGGTTTTGAATTTGGCTGGTAATGAATTGAATGGTTCTGTGCCTGGTTTTGTTGGGAGGTTTACAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGAATGTTCCGCCAGAGATTGGGGAGCATTGTTGGAAGCTTGAGCATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGGATTCCGGTGAGTTTGGGGAATTGTGGGAGGTTGAGGACGCTTTTGCTGTATTCTAATTTGTTGGAAGAAGGTATTCCTGGTGAGCTTGGGAAGCTTAAGAGACTTGAGGTGTTGGATGTTTCCAGGAACACTCTCAGTGGCTCTGTGCCGAGGGCACTTGGGAATTGCTCAGAGTTGTCGGTTCTTGTGCTGTCAAATCTCTTTGATGTGCGCGGGGATGCTGCCGGTGATTTTGGGAAATTGGGTTCAGTGAATGATGAGGTGAATTATTTTGAAGGGTCAATTCCTGTGGAGGTTTTTTCGCTTCCAAAGTTGAGGATACTGTGGGCTCCCATGGTGAATTTAGAAGGCAGTTTTAAGGGGAATTGGGGTGGTTGTCAGAGCTTGGAGATGGTAAATTTGGCTCAGAATTTTTTCAATGGGGAATTTCCGAACCAGCTTGGTGTCTGCAAGAGACTGCATTTTCTTGATTTAAGTGGAAACAATCTTACTGGGGTGCTTTCTGGAGAGCTTCACGTTCCCTGTATGAGCGTGTTTGATGTTAGTGGGAACATGTTATCTGGTTCAGTTCCTGATTTCTCCAATACCGATTGTCGCCCTGTTCCTTCCTCGAACGGAGACCTGTTTGAAGATGGGAATGTTTCCTCGCCATATGCGTCGTTCTTTTTGTCAATGGTTCTTGAAAGATCTCTTTTTACATCAATGGGGGGAGTTGGTACTTCCGTTGTTCACAACTTTGGGCAAAACAGCTTTACTGGCATTCAGTCGCTACCCATACCACATGACAGGCTGGGGAAGAAGAACGGTTACACGTTTCTTGTTGGAGGAAATATTCTTACAGGATCATTTCCTACATATTTATTTGAGAAATGTGATGGATTAGATGCATTACTTTTAAATGCCAGTTATAATAAGATAACTGGTCATATACCTTCCAATATCAGTCGAATGTGCAGATCATTGAAATTTTTGGATGTGTCTGGAAATCAACTTGCAGGAACGATTCCTGTTGATTTAGGGAATGTGGTCTCCCTTGTATCATTGAACCTCAGTAGGAATCAGTTGCAAGGTCAAATTCCCACCAGCCTTGGCCAGATGAAGAATCTAAAGTTTCTCTCTTTAGCTGGTAATAAGTTAAATAGCTCAATTCCTACCAGCCTGGGGCAGTTGTACTCTTTGGAAGTCTTTGACCTTTCTTCAAACTCTCTTACTGGTGAGATTCCAAAGGCTATTGAGAACATGAGAAACCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCACATTCCTGATGGTTTGGCATATGTCACTACACTCTCAGCATTCAATGTGTCTTTCAACAACTTATCTGGATATTTGCCTTCCAACAGTGGCTTGTTTAAATGCAGCAGTGCTGTTGGGAATCCGTACCTAAGTGCCTGCCGCGGAGTCTCTCTGACTGTGCCATCAGGGAATCAGCTAGGGCCGATTGATAGCAACTCTTATAATACGGAAACAGAACAAGATACTGGCAAGAAGAGTGGGAGTGACTTCAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTACTTATAGCCCTGATTGTTCTATTCTTTTACACACGGAAGTGGAAGCCAAGGTCCAGGGTTGTTGGCTCTACAAGAAAAGAAGTAACAGTGTTTACTGATATTGGGGTCCCATTGACGTTTGAAACTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGTATTGGGAGTGGAGGTTTTGGGGCAACATACAAGGCAGAGATATCATCAGGAATCCTGGTGGCAGTCAAACGTCTAGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCCGAGATCAAGACCCTTGGGAGGCTTCATCATCCAAATCTTGTCACTCTGATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCAGGTGGAAATCTCGAAAAGTTTATCCACGAGAGGTCAACGAGGGCAGTAGACTGGAGAATTCTTCACAAGATTGCATTGGACATAGCCCGTGCACTGGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGCGATGTCAAGCCCAGCAACATCTTGTTGGATGATGATTTCAATGCTTATCTATCGGATTTTGGATTGGCCAGACTTCTGGGAACTTCAGAGACACATGCAACCACTGGTGTAGCAGGAACATTTGGGTATGTTGCTCCAGAATATGCAATGACTTGCCGTGTTTCTGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTAATTTTGGAAATGGGTTCAACATAGTGGCATGGGCATGCATGCTACTGAAGCAAGGAAGGGCAAATGAGTTTTTCACTGCCGGGTTATGGGAAGCAGGACCTGGAGATGATTTGGTAGAGGTGCTTCACTTGGCAATTGTGTGTACTGTTGACTCTCTCTCTACCAGACCTACAATGAAACAAGTTGTCAGAAGGCTTAAGCAACTTCAACCTCCGTCATGCTAG 2979 0.4408 MQRVLSLPFNALEGEIPEAIWGMEKLEVLDLEGNLISGYLPLRINGLRKLRVLNLGFNRIIGEVPSSIASLESLEVLNLAGNELNGSVPGFVGRFTGVYLSFNQFSGNVPPEIGEHCWKLEHLDLSGNSLVQGIPVSLGNCGRLRTLLLYSNLLEEGIPGELGKLKRLEVLDVSRNTLSGSVPRALGNCSELSVLVLSNLFDVRGDAAGDFGKLGSVNDEVNYFEGSIPVEVFSLPKLRILWAPMVNLEGSFKGNWGGCQSLEMVNLAQNFFNGEFPNQLGVCKRLHFLDLSGNNLTGVLSGELHVPCMSVFDVSGNMLSGSVPDFSNTDCRPVPSSNGDLFEDGNVSSPYASFFLSMVLERSLFTSMGGVGTSVVHNFGQNSFTGIQSLPIPHDRLGKKNGYTFLVGGNILTGSFPTYLFEKCDGLDALLLNASYNKITGHIPSNISRMCRSLKFLDVSGNQLAGTIPVDLGNVVSLVSLNLSRNQLQGQIPTSLGQMKNLKFLSLAGNKLNSSIPTSLGQLYSLEVFDLSSNSLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAYVTTLSAFNVSFNNLSGYLPSNSGLFKCSSAVGNPYLSACRGVSLTVPSGNQLGPIDSNSYNTETEQDTGKKSGSDFSSIEIASITSASAIVSVLIALIVLFFYTRKWKPRSRVVGSTRKEVTVFTDIGVPLTFETVVQATGNFNAGNCIGSGGFGATYKAEISSGILVAVKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIHERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSNFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGDDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSC* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0409 992 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 3 991 - -
Pvu4g0409 992 Pfam Leucine Rich Repeat 49 71 IPR001611 GO:0005515
Pvu4g0409 992 Pfam Leucine Rich Repeat 119 141 IPR001611 GO:0005515
Pvu4g0409 992 Pfam Leucine Rich Repeat 525 547 IPR001611 GO:0005515
Pvu4g0409 992 Pfam Protein kinase domain 716 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0409 992 SUPERFAMILY Protein kinase-like (PK-like) 695 984 IPR011009 -
Pvu4g0409 992 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 991 - -
Pvu4g0409 992 MobiDBLite consensus disorder prediction 624 644 - -
Pvu4g0409 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Pvu4g0409 992 Gene3D Ribonuclease Inhibitor 203 340 IPR032675 -
Pvu4g0409 992 SMART LRR_typ_2 499 523 IPR003591 -
Pvu4g0409 992 SMART LRR_typ_2 165 188 IPR003591 -
Pvu4g0409 992 SMART LRR_typ_2 119 141 IPR003591 -
Pvu4g0409 992 SMART LRR_typ_2 23 46 IPR003591 -
Pvu4g0409 992 SMART LRR_typ_2 475 498 IPR003591 -
Pvu4g0409 992 SMART LRR_typ_2 71 93 IPR003591 -
Pvu4g0409 992 SMART LRR_typ_2 47 70 IPR003591 -
Pvu4g0409 992 SMART LRR_typ_2 547 571 IPR003591 -
Pvu4g0409 992 SMART serkin_6 713 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0409 992 Gene3D Transferase(Phosphotransferase) domain 1 789 989 - -
Pvu4g0409 992 SUPERFAMILY L domain-like 407 592 - -
Pvu4g0409 992 ProSitePatterns Protein kinases ATP-binding region signature. 719 741 IPR017441 GO:0005524
Pvu4g0409 992 CDD STKc_IRAK 719 987 - -
Pvu4g0409 992 Gene3D Phosphorylase Kinase; domain 1 676 788 - -
Pvu4g0409 992 Gene3D Ribonuclease Inhibitor 375 614 IPR032675 -
Pvu4g0409 992 Gene3D Ribonuclease Inhibitor 2 199 IPR032675 -
Pvu4g0409 992 ProSiteProfiles Protein kinase domain profile. 713 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0409 992 SUPERFAMILY RNI-like 4 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0409 Pvu-Chr4 4141435 4145345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0409 3 992 Receptor kinase-like Gene Family AT3G02130 65.480 0.0 1231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Pvu4g0409 Pkinase 5.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0409 - - pvu:PHAVU_004G037500g 1931.76