LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu4g0370	ATGGCAGAACCATCCACCTCCGCCGCCTCCACCGCCTCCTCCACCACCACTACGACGGCGGTTATCAAAAGCTGGGCTGACGAAGCGGACGAAGAAACCGAATCCCCCGCCACCATCGCCGCCGCCGAAACCTCTTCCGTCAACCTCGACGCGTTAAAAATCGAAGACAACGACGATAACCCTCCCAAACTCTTAGATGACCCCGACGATTCGAACATCCAAGCGGTTACTTCTGGAGAAACGCCTTACACGTCGGCGTCGAAGTTCGAGGACCTGAACCTCTCGCCGGAGCTTCTGAAGGGGCTCTACGTGGAGATGAAGTTCGAGAAGCCGAGCAAGATCCAGGCGATAAGTTTGCCGATGATCCTGAGCCCGCCGCACCGGGACCTCATCGCGCAGGCGCACAACGGGTCTGGAAAGACTACGTGCTTCGTTCTTGGGATGCTCAGCCGCGTCGATCCCAAGGTGCAGGCGCCGCAGGCTCTCTGTGTCTGCCCCACCCGGGAGTTGGCTAATCAGAACACCGAGGTTCTCCGCAAGATGGGGAAGTACACTGGGATTGCGTCGGAGTGCGCGGTGCCAACGGATAACAATGCGCTCTCGATCGCGAAAAGGGCGCCGATTATGGCGCAGGTGGTGATTGGAACCCCTGGCACCATCAAGAAGTGGATGAGCTTCAAGAAACTTGGGGCCTCCAGGTTGAAGATTCTTGTTTTTGATGAGGCGGATCAAATGCTTGCGGAGGATGGTTTTAAAGATGATTCCCTGAGGATAATGAAGGAAATAGAAAGAGTCAATTCTAATTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCGTTTCAAGGACAGTCAAAGCAGATCATAATAAACTTTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTAAAGCAATATAAAGTCTATTGTTCTGATGAACTTGCTAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATTATATTTGTGCGTACAAGAAATAGTGCACAAATGTTGCATAAATCGCTTGTTGACTTGGGCTATGAGGTTACATCTATTCAAGGTGCTCTTGGTTATGAAGAGAGAGAGAAAATTGTTAAAGAGTTCAGAGATGGTTTGACTCAAGTTCTTATTTCAACTGATCTTCTTGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTCATCAATTATGATCTTCCAATGAAACACACTGCCAGCTATACCCGTGAACCCGAGCCTGATTGTGAAGTGTATTTGCATAGGGTTGGCAGAGCTGGGCGTTTTGGGCGCAAGGGGGCTGTATTTAACTTGATATGTGATGAAAAGGATGAAAGGCTCATGTCCAAGATCGAGAATCATTTTGGCACTCGTGTAGCTGAGGTGCGAGCAAAAAGTGTTGAAGACTATAAAGGTGCTCTGAAGGAAGCCGGTTTACTGCAATGA	1488	0.4812	MAEPSTSAASTASSTTTTTAVIKSWADEADEETESPATIAAAETSSVNLDALKIEDNDDNPPKLLDDPDDSNIQAVTSGETPYTSASKFEDLNLSPELLKGLYVEMKFEKPSKIQAISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELANQNTEVLRKMGKYTGIASECAVPTDNNALSIAKRAPIMAQVVIGTPGTIKKWMSFKKLGASRLKILVFDEADQMLAEDGFKDDSLRIMKEIERVNSNCQVLLFSATFNDTVKNFVSRTVKADHNKLFVKKEELSLDAVKQYKVYCSDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAQMLHKSLVDLGYEVTSIQGALGYEEREKIVKEFRDGLTQVLISTDLLARGFDQQQVNLVINYDLPMKHTASYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDEKDERLMSKIENHFGTRVAEVRAKSVEDYKGALKEAGLLQ*	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu4g0370	495	Gene3D	-	66	303	IPR027417	-
	Pvu4g0370	495	Gene3D	-	306	488	IPR027417	-
	Pvu4g0370	495	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	87	116	IPR014014	GO:0003724
	Pvu4g0370	495	SMART	helicmild6	351	444	IPR001650	-
	Pvu4g0370	495	MobiDBLite	consensus disorder prediction	1	23	-	-
	Pvu4g0370	495	CDD	SF2_C_DEAD	309	453	-	-
	Pvu4g0370	495	MobiDBLite	consensus disorder prediction	52	66	-	-
	Pvu4g0370	495	Pfam	DEAD/DEAH box helicase	113	284	IPR011545	GO:0003676\|GO:0005524
	Pvu4g0370	495	Pfam	Helicase conserved C-terminal domain	322	444	IPR001650	-
	Pvu4g0370	495	PANTHER	DEAD-BOX HELICASE DBP80	66	474	-	-
	Pvu4g0370	495	SMART	ultradead3	107	312	IPR014001	-
	Pvu4g0370	495	MobiDBLite	consensus disorder prediction	1	86	-	-
	Pvu4g0370	495	MobiDBLite	consensus disorder prediction	71	86	-	-
	Pvu4g0370	495	CDD	DEADc_DDX19_DDX25	94	297	-	-
	Pvu4g0370	495	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	159	462	IPR027417	-
	Pvu4g0370	495	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	66	474	-	-
	Pvu4g0370	495	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	325	485	IPR001650	-
	Pvu4g0370	495	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	121	296	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu4g0370	Pvu-Chr4	3744011	3749498	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu4g0370	80	476	Eukaryotic Initiation Factors Gene Family	AT1G72730	36.765	8.52e-72	232

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu4g0370	K18655		-	gmx:100784739	776.933