Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0355 ATGGGTTGCATCAGCTCCAAAAGTGTGGTTGCCAAAGCTTATTCTCCATCCCCAACAAGGGTGGAGGTTTCAGAGACGAATCGATCCTCCAGCAGGGGCCGTTCCGGATTGAAGATTTTGGATTCCAAAGCAAATTTGGACAATGAGAGGAACAACAAGTTCAAGAAAAATAGTTCAAAGAAGAGTAATGGGGCTTTTAACTTGAGGGTTGGGTTGGCACAGAGGAGTGTTGAAGCAGAACAAAATGCTGTTGGTTGGCCTCCTTGGCTCACTGCTGTTGCAGCAGAAGCCATTCAAGGGTGGGTTCCTCTCAAAGCCGATTCTTTTCAGAAGTTAGAAAAGATTGGTCAAGGTACATATAGTAGTGTGTTTCGAGCTCGTGAAGTTGAAACCGGAAAGATGTTTGCTTTGAAAAAGGTTCGCTTTGACAATTTTCAACCTGAGAGCATTAGGTTTATGGCAAGAGAAATAACGATCCTTCGTAGGCTTGATCACCCAAACATCATGAAATTGGAGGGTATAATCACTTCTCGTCTATCAAATAGCATATATCTTGTATTTGAGTACATGGAGCATGATCTTGCTGGCCTAGTGTCACGTTCTGACATAGTGTTCACTGAATCACAG 627 0.4322 MGCISSKSVVAKAYSPSPTRVEVSETNRSSSRGRSGLKILDSKANLDNERNNKFKKNSSKKSNGAFNLRVGLAQRSVEAEQNAVGWPPWLTAVAAEAIQGWVPLKADSFQKLEKIGQGTYSSVFRAREVETGKMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRSDIVFTESQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0355 209 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Pvu4g0355 209 SMART serkin_6 109 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0355 209 MobiDBLite consensus disorder prediction 19 36 - -
Pvu4g0355 209 MobiDBLite consensus disorder prediction 1 40 - -
Pvu4g0355 209 Pfam Protein kinase domain 109 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0355 209 SUPERFAMILY Protein kinase-like (PK-like) 103 207 IPR011009 -
Pvu4g0355 209 ProSiteProfiles Protein kinase domain profile. 109 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0355 209 PANTHER CELL DIVISION PROTEIN KINASE 3 209 - -
Pvu4g0355 209 PANTHER CYCLIN-DEPENDENT KINASE 3 209 - -
Pvu4g0355 209 Gene3D Phosphorylase Kinase; domain 1 104 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0355 Pvu-Chr4 3584289 3587255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0355 101 209 Core Cell Cycle Gene Families AT5G10270 42.742 6.68e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pvu4g0355 Pkinase 8.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0355 - - pvu:PHAVU_004G0322000 387.497