Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0354 ATAAAGTGTTATATGAGGCAACTTTTAAGTGGACTGGAGCATTGTCATATGCGTGGTATTATGCATAGGGACATCAAGGTATCAAATATCTTATTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATCAGTACAGATAATAAACATCCTTTGACAAGTCGTGTTGTGACTTTGTGGTATCGTCCTCCTGAACTATTGATGGGATCAACTAGCTATGGAGTGTCAGTGGATCTATGGAGTGTTGGTTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGGAGAACCGAGGTTGAACAATTACACAAAATTTTTAAATTATGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGACTAAACTTCCTCATGCAACCATGTTCAAGCCTCAAACAAATTATGAAAGCTCTCTTCGAGAAAGATGTGCAGATTTTCCTGCATCTGCTATAGACCTACTTGAGACTTTATTATCCATTGACGCAAGTAACCGAGGAACTTCCTCCTCTGCCTTAATGTCTGAGTATTTTAGTGTCAGGCCATACCCTTGTAACCCATCAAACTTGCCAAAATATTCACCTAGCAAAGAAATGGATGTAAAAGTTCAAGAAGACTCATCCAGGAAAAAGATTGAAGGTAAAATGAGAGAGGTTGCAACATCAAGAAGACAACAAAGACGAGTCTCTAGACTTATGCAAGATCAAAACAATTTGGGTAAATCAAGTTCAAAAGAGAACATGCAAAACATTTCTCAAAATGGTCATAGAGATGATGGCAAAACACATCTTACAAGAGGAAAAGGAGGAGGCATGTACAAAGAGCATACAAAGTCTGCATTGGATACTATGTCTGAGACTTCCCAAATGATGAATGTTGTCAATGGTAATGGATATAGTGTGCCACTACAAGTCCCAGGTTCTAACAATGATTATACATGGGTAAAAAGAAGAAAACAAGATGCATCATCAACTCTATCAGATGGCTCAAGAAGCAAAATTAGTGCACTAGATCCAAACTTTGCCAAAGGAACATATGATTTAACTAACCAAAGGGTTTCAATGGATTTTGATCCTGCTGAATTGATGAATGCTCAGGGCCGAAGGGAACTTGATGCACAACGTGCAATTCGTAAATCAAGGTTTGGAAGAGATAAATGA 1179 0.3817 IKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISTDNKHPLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCADFPASAIDLLETLLSIDASNRGTSSSALMSEYFSVRPYPCNPSNLPKYSPSKEMDVKVQEDSSRKKIEGKMREVATSRRQQRRVSRLMQDQNNLGKSSSKENMQNISQNGHRDDGKTHLTRGKGGGMYKEHTKSALDTMSETSQMMNVVNGNGYSVPLQVPGSNNDYTWVKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLTNQRVSMDFDPAELMNAQGRRELDAQRAIRKSRFGRDK* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0354 392 PANTHER CELL DIVISION PROTEIN KINASE 1 386 - -
Pvu4g0354 392 MobiDBLite consensus disorder prediction 237 261 - -
Pvu4g0354 392 Pfam Protein kinase domain 2 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0354 392 MobiDBLite consensus disorder prediction 195 280 - -
Pvu4g0354 392 Gene3D Transferase(Phosphotransferase) domain 1 1 224 - -
Pvu4g0354 392 ProSiteProfiles Protein kinase domain profile. 1 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0354 392 MobiDBLite consensus disorder prediction 377 392 - -
Pvu4g0354 392 PANTHER CYCLIN-DEPENDENT KINASE 1 386 - -
Pvu4g0354 392 MobiDBLite consensus disorder prediction 262 280 - -
Pvu4g0354 392 SUPERFAMILY Protein kinase-like (PK-like) 1 189 IPR011009 -
Pvu4g0354 392 MobiDBLite consensus disorder prediction 204 236 - -
Pvu4g0354 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 20 32 IPR008271 GO:0004672|GO:0006468
Pvu4g0354 392 SMART serkin_6 1 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0354 392 MobiDBLite consensus disorder prediction 371 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0354 Pvu-Chr4 3580733 3583430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0354 1 250 Core Cell Cycle Gene Families AT5G64960 47.410 2.57e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pvu4g0354 Pkinase 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0354 - - pvu:PHAVU_004G0322001 792.727