Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0351 ATGGCAAGGAAGAGAAAGGGTGGTGAAGTAGTTGAAGAGAGAGAGATATGTGAGGGAAGCATGGCTTGGGATGAGATGATGAAACAGGCTGCAGCACTTGGAGGAGTCCAAAGAGCCAGGAAGAGGTTTGTTGGGGTGAGGCAAAGGCCATCAGGTAGATGGGTGGCTGAGATCAAAGACACCATTCAGAAGATAAGAGTGTGGTTGGGGACTTTTGACACTGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCTTGCTTAGAGGTGCAAACACAAGGACAAACTTCTGGCCATGTTCTCAATCCTCCACAAGTCCAGCACTTTCCTCAAAAATCACCAATCTCCTCCTTCAGAGGCTTAAAGAAAGGAACAACAACAACAACTGCTCCTCTTCCTCCACCTCCACCTCACTTCTCATCAACCACCAACATATGCAACAAGAAGTTGATGCATATGGTGATGGTTCAACACAATTCTCAATTGACCAATTCACTGATTTTCTCAATGACCCTGAAGATTATAGCGCAAGCAACAATGACTTCATCAACAACACTGCACAAATTGACTACATTACTAGTAGTTTTGAATCATGTTTGACTGAAAAAGATGGGGGGACAAAAGTGGATGTGCAATACAAAACCAACATTGTGACACCACAGACTTCAAGTAATGACAGCAACTCAGGAGTGGAGGACAGTGAAGAAGAAGGCACAGACACTAACTTTGATGTCCATGATTTTAGGTTCCTAGACAACATTGCTCCACCTAGTTACTACTCTCCTTTTGAGATGGCTGAAGAGATGGAGGAGCCTGTGGAGGCAGAGAACTATGGTGGTGATGAGCCTTCAATGCTTAGAGCTGTGATGAAGAGAATGACATATGAGAGGAAGTTCTCAGCCTCTCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCAGGAAACATGAAAGGAAGAGGAATAACTGATCAATTAACCAGCCTTCAAATGGCTTGTAGCAAAAACAGACTTAAGAAGAATGAAGAGGTGAAAGAGTACATGGAAGCAATGGATGGAAAACAGGAAGAACACCACCAACAAACAACAACTGACATGGATTCTTCTAGTGTTGATGGGGAACTGTTACTTTGGAATTCACTAGATCTTCCTCCAATTTGCTTTGTTAACTTGCTAGAAAACGGTTCATTCAATTAG 1215 0.4313 MARKRKGGEVVEEREICEGSMAWDEMMKQAAALGGVQRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNNNNNCSSSSTSTSLLINHQHMQQEVDAYGDGSTQFSIDQFTDFLNDPEDYSASNNDFINNTAQIDYITSSFESCLTEKDGGTKVDVQYKTNIVTPQTSSNDSNSGVEDSEEEGTDTNFDVHDFRFLDNIAPPSYYSPFEMAEEMEEPVEAENYGGDEPSMLRAVMKRMTYERKFSASLYAFNGIPECLKLKLESGNMKGRGITDQLTSLQMACSKNRLKKNEEVKEYMEAMDGKQEEHHQQTTTDMDSSSVDGELLLWNSLDLPPICFVNLLENGSFN* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0351 404 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 339 - -
Pvu4g0351 404 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Pvu4g0351 404 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Pvu4g0351 404 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Pvu4g0351 404 Coils Coil 343 363 - -
Pvu4g0351 404 MobiDBLite consensus disorder prediction 218 244 - -
Pvu4g0351 404 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Pvu4g0351 404 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Pvu4g0351 404 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Pvu4g0351 404 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 339 - -
Pvu4g0351 404 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Pvu4g0351 404 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0351 Pvu-Chr4 3566458 3567993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0351 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.40e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu4g0351 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0351 K09286 - gmx:100786711 667.151