Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0336 ATGTTCACATCCAAGAAAATGGTTTATGTTGGTTTTTTCCTTCTGGGGTGTTTCTCCATCATGATCTCCTATGCTAATGGTTATGCCACCAATGGGGGTTGGAACAATGCACATGCCACATTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGCTATGGAAACCTGTATAGCCAAGGGTATGGAACTGACACAGCAGCTCTTAGCACTGCCTTGTTCAACAATGGCTTGAGTTGTGGCTCATGCTACCAAATCAAATGTGCAAATGATCCACAGTGGTGTCTCCCTGGCACCATTGTAGTCACTGCCACTAATTTCTGCCCCCCTGGTGGATGGTGTGATCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTTTTTCAGCAAATTGCTCAATACAAAGCTGGTATTGTTCCTGTGGTTTACAGAAGGGTAAGGTGCAGAAGAAGGGGCGGAATCAGGTTCACCATCAATGGTCATTCATACTTCAACTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCTGTGGCCATCAAAGGTTCAAGGAGTAGATGGCAAGCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGTAATTCCTACCTTAATGGACAGAGTCTCTCCTTTTTGGTCACCACAAGTGATGGTGGCAGTGTCCTCTCATACAATGCTGCACCACCAAGTTGGTCCTTTGGACAAACCTACACTGGAAGGCAATTCCTCTACTAA 753 0.4622 MFTSKKMVYVGFFLLGCFSIMISYANGYATNGGWNNAHATFYGGSDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGSCYQIKCANDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRSRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSDGGSVLSYNAAPPSWSFGQTYTGRQFLY* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0336 250 Gene3D - 156 248 IPR036749 -
Pvu4g0336 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 156 IPR007112 -
Pvu4g0336 250 SMART dpbb_1 69 146 IPR007112 -
Pvu4g0336 250 Gene3D - 19 152 IPR036908 -
Pvu4g0336 250 Pfam Lytic transglycolase 69 146 IPR009009 -
Pvu4g0336 250 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Pvu4g0336 250 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Pvu4g0336 250 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Pvu4g0336 250 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Pvu4g0336 250 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Pvu4g0336 250 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Pvu4g0336 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Pvu4g0336 250 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Pvu4g0336 250 PANTHER EXPANSIN-A15 11 248 IPR002963 GO:0009664
Pvu4g0336 250 PANTHER EXPANSIN 11 248 - -
Pvu4g0336 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Pvu4g0336 250 SUPERFAMILY Barwin-like endoglucanases 33 174 IPR036908 -
Pvu4g0336 250 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Pvu4g0336 250 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Pvu4g0336 250 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Pvu4g0336 250 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Pvu4g0336 250 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Pvu4g0336 250 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Pvu4g0336 250 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Pvu4g0336 250 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Pvu4g0336 250 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Pvu4g0336 250 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0336 Pvu-Chr4 3354742 3356837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0336 6 248 Expansin Gene Family AT2G03090 76.494 1.11e-138 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0336 - K20628 gmx:100799370 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0336 4 3354742 3356837 Pvu8g0382 8 3131412 3133124 PCT