Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0334 ATGGCTTTTTCTTCCCTCAGAATCGATGAAACAGTGCCTCCTTCGAAGGTGGTGCACTTTCGAAACCTTCCTGAACAGTGCTCTCATGAGGATCTCACAGAGCTGTGTAATCCCTTCGGTAAAGTTGTTAATCTTTTGTGCAACGTTGGCCCCAACAAGAACCAGGGTTTTGCTGAGTTTGAAGATCTAAATGATGCCATTTCAATGGTTTCAAACTATGCTTCGTCTCCAGATCCTGTTGAGATACATGGGAGAAATATTTACGTGCAGTATTCTGATAGACCAGAAATTGTTATTAGCAGATTTGGCAAAGGAAATATTCTGCTGGTAACCATGGAAGAGGTGAAAGCTGGAGATGTAAGCATTGATGCCATGAGCTTGGTCTTTTCTGAATATGGTTTGGTGCAAAAGATTTCAACATTTGAAAAGAACTCAGGTTTCCAGGCTTTGATTCAATATGCTGATAGTGAATCTGCTACTTCTGCTAAGGAAGCATTGGATGGAAAAAACATACCTAGATCCTTACTTCCAGAGCATATTAGTGATTGTAAGTTTCGCATTGCATACTCAGGGCATCGAGAACTTAATATTAAGTTTCAGTCTAATCGTAGCAGGGACTACACAAATGCTACGCTTCCTGTTAATGAGGCTACTATTGCTAGGGCATTACAGCCAATACCTAGAACTGCTGACAATCATGTTCTTTTAGCTTCATTTGAAAACATGCTCCAAGATGTCACTCTAGATGTTCTTCATGGGGTGTTCTCTGAAATTGGAACAGTGCACAAAATTTATATATTTAAAAAGAACACTCGAACTCATGCACTAATTCAGTACTATGATGTGGCGACAGCAAAAGCTGCGAAAAATACTCTGGAGGGTCGCTGTATATATGCTGGTGGCTATTCTAAGATTCATTTGACATACTCTCGTCACGATGATGTTAATGTAAAGGATTATGGTGACAAAAGTAGAGACTATTCAAAGCCTGAACACAGTGTGCCACAAGCTCCAGCAACAGCTTGGCAGAATCCTTATGCAGCATCTATGAACCCTAGTAGTGGTGTCCATGCTTATCCCTATTGTTACATATCAGCACCTGCTACTTTTCCTGATCAAGTTTATGCCTATCCTCTTGAACAAAGCAACCCTATGGTTCACACTACAGGTTACATAGGAGTTCCTCCTTTCTCACCTCAAATGCAAGGCTTTTTAGGGTTTTTTCCTATACAACCTTATTATTATGGTTACTAG 1254 0.4027 MAFSSLRIDETVPPSKVVHFRNLPEQCSHEDLTELCNPFGKVVNLLCNVGPNKNQGFAEFEDLNDAISMVSNYASSPDPVEIHGRNIYVQYSDRPEIVISRFGKGNILLVTMEEVKAGDVSIDAMSLVFSEYGLVQKISTFEKNSGFQALIQYADSESATSAKEALDGKNIPRSLLPEHISDCKFRIAYSGHRELNIKFQSNRSRDYTNATLPVNEATIARALQPIPRTADNHVLLASFENMLQDVTLDVLHGVFSEIGTVHKIYIFKKNTRTHALIQYYDVATAKAAKNTLEGRCIYAGGYSKIHLTYSRHDDVNVKDYGDKSRDYSKPEHSVPQAPATAWQNPYAASMNPSSGVHAYPYCYISAPATFPDQVYAYPLEQSNPMVHTTGYIGVPPFSPQMQGFLGFFPIQPYYYGY* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0334 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 202 IPR000504 GO:0003723
Pvu4g0334 417 SUPERFAMILY RNA-binding domain, RBD 241 331 IPR035979 GO:0003676
Pvu4g0334 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Pvu4g0334 417 Gene3D - 6 103 IPR012677 -
Pvu4g0334 417 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 7 354 - -
Pvu4g0334 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 72 IPR000504 GO:0003723
Pvu4g0334 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 243 297 IPR000504 GO:0003723
Pvu4g0334 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 173 IPR000504 GO:0003723
Pvu4g0334 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 312 IPR000504 GO:0003723
Pvu4g0334 417 SMART rrm1_1 107 178 IPR000504 GO:0003723
Pvu4g0334 417 SMART rrm1_1 17 90 IPR000504 GO:0003723
Pvu4g0334 417 SMART rrm1_1 236 306 IPR000504 GO:0003723
Pvu4g0334 417 Gene3D - 104 217 IPR012677 -
Pvu4g0334 417 Gene3D - 231 336 IPR012677 -
Pvu4g0334 417 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 7 354 - -
Pvu4g0334 417 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Pvu4g0334 417 SUPERFAMILY RNA-binding domain, RBD 119 210 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0334 Pvu-Chr4 3317393 3331517 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0334 K14948 - gmx:100794075 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0334 4 3317393 3331517 Pvu8g0383 8 3141197 3146979 PCT