Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0330 ATGGATGCAATGGAGAACAGTAATCACAGAGAGATAATGGCAGAGCAAGCGTTTGATTTGCCACCAGGGTTCAGGTTCCATCCAACAGATGAAGAACTCATCACTCATTACCTCTCACAGAAGGTTCTTGATAGCTGCTTCTGCTCCAGGGCCATTGGAGAGGCTGATTTGAACAAGTGTGAACCGTGGGATTTGCCTTGTATGGCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTCTGTGAGGGACAGAAAATACCCAACTGGTCAAAGGACTAATAGAGCCACTGGTGCTGGTTATTGGAAGGCCACAGGCAAAGACAAAGAGATATACAAGGCAAAGAAACTTATTGGGATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCAAGTGGGGAAAAAACAAACTGGGTCATGCATGAATACAGATTAGAAGATGATCATTCCATGCACAATCCACACAAAAAGGCCATGAATAATTGGGCCATCTGCAGGATTTTTGAGAAGACTAACTGTGGGAAGAAAATGCAGATTTCTGGTTTGGTGAGGTTCACCTCCTTTGGAAAGGACATGCCTTCATTGATGGATTCTTCTCCATACAACACCAGTGAAGCAAAGGCTGTTATGGGGGAGTCATCACACTTCTCAGATCCAAACCAAAGTGAGGACCTAAGAACACATGATGAACACATAGTTGATAGCCTAGAGACTCTCATGATGGCATCATCATCTTCATATTCTTCAAACCCCTTTGATGTTTCCCCTGCCTCTTGGACTCTTCCCAAATCCTCCCCTACTGTGCCCCACCAATCCCTCCAAGTTGGGAACTCACACTGCTCAACCTATTTCATGGATCAGGAACAGTCCATGTTGGGGATGCTGATTGAAAACCATGGATCAAGTAGTAGCCTCAGAACACATAGACCACAGGATAAAGACTTTGATGCTGACATCTCCTCTCTCATGTACAATGATGAAATGTTTCAAAGATCATTTGGGAACCAGGAATATTCATCACCTTCTCTAGGACATGTGTACACCAGTGGCCTATGGGGATTCTGA 1065 0.4404 MDAMENSNHREIMAEQAFDLPPGFRFHPTDEELITHYLSQKVLDSCFCSRAIGEADLNKCEPWDLPCMAKMGEKEWYFFSVRDRKYPTGQRTNRATGAGYWKATGKDKEIYKAKKLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLEDDHSMHNPHKKAMNNWAICRIFEKTNCGKKMQISGLVRFTSFGKDMPSLMDSSPYNTSEAKAVMGESSHFSDPNQSEDLRTHDEHIVDSLETLMMASSSSYSSNPFDVSPASWTLPKSSPTVPHQSLQVGNSHCSTYFMDQEQSMLGMLIENHGSSSSLRTHRPQDKDFDADISSLMYNDEMFQRSFGNQEYSSPSLGHVYTSGLWGF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0330 354 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Pvu4g0330 354 Gene3D NAC domain 29 174 IPR036093 GO:0003677|GO:0006355
Pvu4g0330 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 336 - -
Pvu4g0330 354 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
Pvu4g0330 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 12 336 - -
Pvu4g0330 354 SUPERFAMILY NAC domain 14 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0330 Pvu-Chr4 3256755 3258663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0330 19 354 NAC Transcription Factor Family AT5G07680 51.032 4.35e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu4g0330 NAM 4.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0330 - - gmx:100781383 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0330 4 3256755 3258663 Pvu8g0386 8 3177057 3179391 PCT