Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0320 ATGGCTGCAATGTCATGTTCCATTGCATTCTCCTATGATGTGTTCCTCAGCTTTAGAGGCTCAGACACACGCCATGGTTTTGTTGGCAACCTTTACAAAGCTCTTCAGGACAAGGGAATCCACACTTTCATTGATGATGAGAAGCTTGAGGGAGGAGAGGAAATAACACCTACCCTTATGAAGGCAATTGAAGAGTCTAGAATTGCGATCACTGTGCTCTCTCACAACTATGCTTCTTCATCATTTTGTTTAGATGAACTTGTTAATATCATTGGTTGTGCTGAGAAGAAAGGCTTGTTGGTTTTGCCTGTTTTTTACAACTTAGATCCTTCTGATGTGAGACACCAGAAAGGTAGTTATGCAGAAGCATTGACAAAGCATGAGGAAAGGTTCAAAGTTAAGAAGGAAAGTTTCAACCATAACAAGGAGAGGTTGGAGAAATGGAAGATGGCTCTGCATCATGTGGCTAACATCTCTGGCTATCATTTCAAACCAGGACATGAATATGAATATGAGTTTATTGGGAGGATTGTTGAGTTGGTCTCTAGCAAGATTAATCGAAGTCCTTTACATGTTGCGGATTACCCAATTGGACTAGAGTCACAAATGTTAGAAGTAATGAAACTTTTGGATGTTGGAAGTGATGATAAGGGTGTTCACATGATTGGGATTCATGGAATTGGTGGGATAGGAAAAACAACACTTGCTCTAGCCATTTATAATTTGGTAGCTCACCATTTTGATGGTTTGTGTTTTCTTGAAAACGTGAGAGAAAACTCAGACAAACATGGGTTACAACATCTCCAAAGCATCCTTCTTGCTGAGTTGGTTAAAGAAAAGAGAATGAACATAACAAGTGTGCAACAAGGAATTTCAATGTTACAACATAGGCTCCAACAGAAGAAGGTTCTCTTGGTAGTAGATGATGCTGACAAGCATGAGCAATTGCAGGCTATTGTTGGCAGATCTGACTGGTTTGGTTCCGGGAGTAGAATCATCATAACAACTCGAGATGAGCAGCTGCTAGCATCTCATAAGGTTAAAAGAACATATGTGGTGAAGGAACTGAACAAGAATGAGGCTCTTCAATTGCTTACATGGAAAGCTTTTAGAACTGATGAAGTTGATCCAAGTTATGAGGAGGTCTTGAATAGTGTGGTAGCTTATGCTTGTGGCCTTCCATTGGCTTTGGAAGTAATAGGCTCCAACTTGTTTGGAAAAAGTATAGAAGAATGGAAATCTGCTATCAAACAATATAAAAGAATTCCTAATAATCAAATTCTAAAAGTACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAAAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATGAATTGGAAGAGGTTCAAGATACACTTCATGGTCATTACGGTGATTGCATGAAGTATCATATTGGGGTGTTGGTTGATAAATCTCTCTTAAAGCTTAGTCTGAATGGTATGGAGGTGACAATGCATGACTTGGTAGAGGACATGGGTAAAGAAATTGTAAGAAAGGAGTCACCAAAAGATCCAGGGAAACGTAGCAGATTATGGTTGCATGAGGATATAATTCAAGTTTTAGAAGACAACACTGGAACTAGAGAAATTGAAATCATGCGTCTGGATTTTCCCTTACTTGACAAAGAAGGAATGATAGAATGGAACAGAAAGGCCTTCAAGAAGATGAGAAACCTCAAAACACTAATTATTAAAAGTGGTAATTTTTCCAAAGGTCCCAAATATCTTCCAAATAGTCTAAGAGTATTAGAATGGTGGAGGTATCCTTCACATGGTTTACCATCCGATTTTCTTTCAAAAAAACTTGTCATGTGCAAGTTGCCTGAGAGTTGCTTTACATCACTTGAGTTGGTTGACTTATTGAAGAAGTTCATGAGTATGAGATTTTTAAATCTGGACAAAAACAAATATTTAAAACAGATACCTGATGTATCTGGTCTCCCAAATTTAGAGAAACTCTCATTTCAACATTGTCAAAATTTAACTACAATTCACAATTCCATTGGATTTTTGCATAAATTGGAAATTTTGAATGCTTTTGGTTGCAGCAAACTTGTAAGTTTTCCACCTATCAAGTTGTCTGCCCTTGAAAAGCTCAATCTCTCACGTTGTTATAGTCTTGAAAGTTTTCCAGAAATATTAGGGAAGATGGAAAACATAAGGTCACTTCAGTTGGAGCACACTGCCATAAAAGAATTGCCATCTTCTATTCAAAATCTTACACAACTTGAAGGGTTACAATTGTCTAACTGTGGAGTTGTTAAGTTACCAAGTAGCATTGTTATGATGTCAAAATTGATTGATCTTATTGGTTGGAAATGGAAAGGGTGGCAATGGATAAAACAGGAAAAGGATGAAGAAAAAGAAGGATCATCTATAGTATCTTCAAATGTAGAATGCCTTTGGGTCTCAGAATGCAACCTGTGTGATGATTTCTTTTCAATTGGTTTCAAGCGATTTGCTCATGTGAAAGACTTAGACCTATCAAAGAATAATTTCACAATCCTACCTGAATGCATCAAAGAGTTTCAATTTTTAAGGAAGCTTAATGTGAATGATTGCAAGCTTCTTCGGGAAATTAGAGGGATTCCACCAAGCTTGAAACATTTCTTAGCAACAAATTGTAAATCCTTGACTTCTTCAAGTATAAGCATGTTCCTAAATCAGGAACTACATGAGGCTGGAAAAACTCAATTTTATTTACCAGGAGAAAGGGTTCCGGAATGGTTTGATCACCAGTGCAATGGACCTTCAATTTCTTTTTGGTTTCAAAATAGGTTCCCTAAGAAGGTTCTTTGTCTTATAATTGGACCTATTGCAGATGACTGTGGAATGTTTTTGCCTATGGTAATCATCAATGGCAACAAATGTTTTCGTGGTAGTGACCATTACATGATAGGAAGGGATCATACATATATTATTGATATTCAAATGATAGGATTTGAAGAAAATTTATATGAAATTCCTTTTGAAAATGAATGGAACCATGCAGAAGTTAAATTTGTAGATTCGGAAGAGACAGCAATTCTTAAAGAAAGTGGAATTCGTATTTTCAAACAAGAAAGTAGCATGAAGGATATTTGGTTTTCTGATCCTTATGGCAAGAGAAAATTAGAAGATAATCTCAATAGCTTGAAATCACAAAGCCAACAATTGCTAAAAAAGCATAGGTTTGTGGACATGGAAGATTTGTAG 3231 0.3665 MAAMSCSIAFSYDVFLSFRGSDTRHGFVGNLYKALQDKGIHTFIDDEKLEGGEEITPTLMKAIEESRIAITVLSHNYASSSFCLDELVNIIGCAEKKGLLVLPVFYNLDPSDVRHQKGSYAEALTKHEERFKVKKESFNHNKERLEKWKMALHHVANISGYHFKPGHEYEYEFIGRIVELVSSKINRSPLHVADYPIGLESQMLEVMKLLDVGSDDKGVHMIGIHGIGGIGKTTLALAIYNLVAHHFDGLCFLENVRENSDKHGLQHLQSILLAELVKEKRMNITSVQQGISMLQHRLQQKKVLLVVDDADKHEQLQAIVGRSDWFGSGSRIIITTRDEQLLASHKVKRTYVVKELNKNEALQLLTWKAFRTDEVDPSYEEVLNSVVAYACGLPLALEVIGSNLFGKSIEEWKSAIKQYKRIPNNQILKVLKVSFDALEEEEKSVFLDIACCFKGYELEEVQDTLHGHYGDCMKYHIGVLVDKSLLKLSLNGMEVTMHDLVEDMGKEIVRKESPKDPGKRSRLWLHEDIIQVLEDNTGTREIEIMRLDFPLLDKEGMIEWNRKAFKKMRNLKTLIIKSGNFSKGPKYLPNSLRVLEWWRYPSHGLPSDFLSKKLVMCKLPESCFTSLELVDLLKKFMSMRFLNLDKNKYLKQIPDVSGLPNLEKLSFQHCQNLTTIHNSIGFLHKLEILNAFGCSKLVSFPPIKLSALEKLNLSRCYSLESFPEILGKMENIRSLQLEHTAIKELPSSIQNLTQLEGLQLSNCGVVKLPSSIVMMSKLIDLIGWKWKGWQWIKQEKDEEKEGSSIVSSNVECLWVSECNLCDDFFSIGFKRFAHVKDLDLSKNNFTILPECIKEFQFLRKLNVNDCKLLREIRGIPPSLKHFLATNCKSLTSSSISMFLNQELHEAGKTQFYLPGERVPEWFDHQCNGPSISFWFQNRFPKKVLCLIIGPIADDCGMFLPMVIINGNKCFRGSDHYMIGRDHTYIIDIQMIGFEENLYEIPFENEWNHAEVKFVDSEETAILKESGIRIFKQESSMKDIWFSDPYGKRKLEDNLNSLKSQSQQLLKKHRFVDMEDL* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0320 1076 Gene3D Ribonuclease Inhibitor 801 912 IPR032675 -
Pvu4g0320 1076 Gene3D Ribonuclease Inhibitor 541 787 IPR032675 -
Pvu4g0320 1076 PRINTS Disease resistance protein signature 221 236 - -
Pvu4g0320 1076 PRINTS Disease resistance protein signature 297 311 - -
Pvu4g0320 1076 PRINTS Disease resistance protein signature 390 404 - -
Pvu4g0320 1076 PRINTS Disease resistance protein signature 703 719 - -
Pvu4g0320 1076 SUPERFAMILY "Winged helix" DNA-binding domain 426 534 IPR036390 -
Pvu4g0320 1076 ProSiteProfiles TIR domain profile. 10 185 IPR000157 GO:0007165
Pvu4g0320 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 449 IPR027417 -
Pvu4g0320 1076 SMART till_3 11 158 IPR000157 GO:0007165
Pvu4g0320 1076 Coils Coil 1047 1067 - -
Pvu4g0320 1076 Gene3D - 355 439 IPR042197 -
Pvu4g0320 1076 Pfam TIR domain 12 185 IPR000157 GO:0007165
Pvu4g0320 1076 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 925 IPR044974 GO:0006952
Pvu4g0320 1076 SUPERFAMILY L domain-like 550 896 - -
Pvu4g0320 1076 Gene3D - 184 352 IPR027417 -
Pvu4g0320 1076 Pfam NB-ARC domain 202 421 IPR002182 GO:0043531
Pvu4g0320 1076 Gene3D - 10 183 IPR035897 -
Pvu4g0320 1076 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 161 IPR035897 -
Pvu4g0320 1076 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0320 Pvu-Chr4 3126300 3130090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0320 12 778 WRKY Transcription Factor Family AT4G12020 32.000 5.55e-81 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0320 - - gmx:100780257 1754.95