Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0317 ATGGAGATAATAACACCAACGCCGCCGCCAACAACCGTCACTGCGACAAACGCAGCCGCCAAATCGCCGGAACTCGACATCGAGACTCCGACCCGGATCCACCAAGCCGCCGGAAACTCGAACCCGAGTCCAAAGCCGGTGTCTTTCTCCAACGGGGTCTTGAAGCGCCACCATGCAAACCACCGCGCCGCCGCCGTGGTGGTTTACAAGGAATGCTTGAAGAACCACGTGGCCAGCTTAGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGTCGCCGGCGGCCACCCCCGACGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGTAACTTCCACCGCCGCGAGCCAGAGGAGCCGCCAATTTCTCCGGCGACGCATCATGTCCTGGAGTACCAGCCCCACCACCGCCACCACCCTCCTCCGCCTCCGCCTCACCGGAGTCCGAACTCCTCCTCTCCGCCGCCGATCTCCTCCTACCCCTCCGCACCCCACATGCTCCTCGCCCTCTCCAGCGGCGGCGGCCTCTCCGTGGCGCCGGAAAACACCGCCGCTCCGGCCATGGCGCATCACTCCCGGAAGCGCTTCCGCACGAAATTCAGCCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGACAAAGTGGGGTGGAAGATGCAGAAGCGCGACGAAAACATGGTTATGGAGTTTTGCAACGAGATTGGTGTGGACAGGGGAGTCCTCAAAGTGTGGATGCATAACAACAAGAACACCTTGGCCAAAAAAGACAACCTTAATGGCAACTCTGCTATTGTCTCTGCTAACGGGATCAACCATGTCGCCAATGTAAACAAAGCTACCGTCATCAGAAGCAACGTTAATGGCCTCGAACACGAGCACGGTGCTGGAATCAACGGCAACACCAACAACGACCACGACCACGACCACAACCACAACCTCAGTTCTTCTCATGATGTGAACGAGTACGAGAATGACAGTGGAACAAACGGTGGTGGAACAAATGGCTCTTCTTCTTCTTAA 1032 0.5901 MEIITPTPPPTTVTATNAAAKSPELDIETPTRIHQAAGNSNPSPKPVSFSNGVLKRHHANHRAAAVVVYKECLKNHVASLGGHALDGCGEFMPSPAATPDDPSSIKCAACGCHRNFHRREPEEPPISPATHHVLEYQPHHRHHPPPPPPHRSPNSSSPPPISSYPSAPHMLLALSSGGGLSVAPENTAAPAMAHHSRKRFRTKFSQEQKEKMHEFADKVGWKMQKRDENMVMEFCNEIGVDRGVLKVWMHNNKNTLAKKDNLNGNSAIVSANGINHVANVNKATVIRSNVNGLEHEHGAGINGNTNNDHDHDHNHNLSSSHDVNEYENDSGTNGGGTNGSSSS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0317 343 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 4 280 - -
Pvu4g0317 343 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Pvu4g0317 343 MobiDBLite consensus disorder prediction 137 169 - -
Pvu4g0317 343 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 197 254 IPR006455 -
Pvu4g0317 343 MobiDBLite consensus disorder prediction 306 322 - -
Pvu4g0317 343 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Pvu4g0317 343 MobiDBLite consensus disorder prediction 148 165 - -
Pvu4g0317 343 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Pvu4g0317 343 MobiDBLite consensus disorder prediction 1 26 - -
Pvu4g0317 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 280 - -
Pvu4g0317 343 SUPERFAMILY Homeodomain-like 187 258 IPR009057 -
Pvu4g0317 343 MobiDBLite consensus disorder prediction 323 343 - -
Pvu4g0317 343 Gene3D - 183 259 - -
Pvu4g0317 343 MobiDBLite consensus disorder prediction 294 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0317 Pvu-Chr4 3089944 3091428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0317 1 253 ZF-HD Transcription Factor Family AT5G15210 52.874 3.50e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu4g0317 ZF-HD_dimer 4.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0317 - - gmx:100814730 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0317 4 3089944 3091428 Pvu8g0420 8 3503662 3506099 PCT