Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0316 ATGGGAAGGCCACCTTGTTGTGATAAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATTTTGGTGTCTTACATACAGGACCATGGTCCTGGCAATTGGAAAGCTGTTCCTGCCAATACTGGGTTGTCAAGGTGCAGTAAGAGTTGCAGACTAAGATGGACTAATTATCTTAGGCCAGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAGAAGATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCCATAGCTGCATACCTGCCACAAAGAACAGACAATGACATAAAGAACTTTTGGAACACCTATCTGAAGAAAAAGCTGAACAAATTGGAAGCAAGTGGTTCTGAAGGAAGCTTGGGACAAGTTGGGGTTTCAGTTTCTCAGTCAATGTCTAGAGGTCAGTGGGAAAGAAGGCTTCAAACTGATATTCACATGGCCAAGAAAGCTCTCAGTGAAGCTCTTTCACCAAAGAAGACATCATCATCTACCTTGTTTGCTGAGTTAAATTCAAACCTTTCCAATGATAACACTGGCTCCTTCTACAACTCCACCAAACCAACACAATCCATGAGCTATGCCTCAAGTGCCGACAACATAGCTCGTTTGTTGAAGGGGTGGATGAAAAACACACCAAAACGTGCTGCCACTCAAAACTCCTTCATCAACTTGGTCGGTTCTGACACTGCTTCCAGTGATGGAACAACAAAGGGAAGCACAAACAGAGTCGAATTGTCTGAGACTTTTGAGACCTTGTTTGGTTATGAGTCTTTGGAGTCTTCAAATTCTGAGTTTTCACCATCTCTTTCTCCTGAGGGCACTCTTTTCCAAGATGAGAGCAAGCCAGATATTGTAGGAATAGACATGCCTTTCTCTTTGCTTGAGAAATGGCTTCTGGATGATACTAGTTGTCAAGAGAAACTTAGCTTCTAG 954 0.4298 MGRPPCCDKGVKKGPWTPEEDIILVSYIQDHGPGNWKAVPANTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNFWNTYLKKKLNKLEASGSEGSLGQVGVSVSQSMSRGQWERRLQTDIHMAKKALSEALSPKKTSSSTLFAELNSNLSNDNTGSFYNSTKPTQSMSYASSADNIARLLKGWMKNTPKRAATQNSFINLVGSDTASSDGTTKGSTNRVELSETFETLFGYESLESSNSEFSPSLSPEGTLFQDESKPDIVGIDMPFSLLEKWLLDDTSCQEKLSF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0316 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Pvu4g0316 317 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pvu4g0316 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 315 - -
Pvu4g0316 317 SMART sant 12 62 IPR001005 -
Pvu4g0316 317 SMART sant 65 113 IPR001005 -
Pvu4g0316 317 Gene3D - 12 65 - -
Pvu4g0316 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Pvu4g0316 317 CDD SANT 68 111 IPR001005 -
Pvu4g0316 317 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pvu4g0316 317 CDD SANT 15 60 IPR001005 -
Pvu4g0316 317 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pvu4g0316 317 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Pvu4g0316 317 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 315 - -
Pvu4g0316 317 Gene3D - 67 126 - -
Pvu4g0316 317 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0316 Pvu-Chr4 3031287 3033176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0316 1 310 MYB Transcription Factor Family AT5G62470 50.997 3.96e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu4g0316 Myb_DNA-binding 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0316 K09422 - gmx:780542 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0316 4 3031287 3033176 Pvu8g0422 8 3541372 3542877 PCT