Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu4g0309 | ATGGCTGATGCTGCTGAGCCTAAAGCATTGCCTGAGGCAGAGAAGAAGAAGGAGCAGACTTTGCCCTTTTACAAGCTCTTCTCATTTGCTGACAAGTGTGATTGGATGCTCATGATCTCTGGCAGCTTAGGAGCCATTGTTCATGGCTCATCAATGCCGGTTTTCTTCCTGCTCTTTGGTGAAATGGTTAATGGCTTTGGCAAGAACCAAATGGACTTGAAGAAAATGACAGAAGAAGTATCGAAGTATGCTCTCTATTTCGTGTACCTTGGGCTTGTCGTTTGCTTATCATCCTATGCAGAAATTGCATGCTGGATGTACACCGGGGAGAGGCAAGTGAGCACACTGAGAAAGAAGTACCTGGAAGCAGTGCTTAAACAGGACGTTGGTTTCTTTGACACGGATGCAAGAACAGGGGATATTGTTTTCAGTGTCTCCACAGACACACTACTGGTTCAAGATGCTATAAGCGAGAAGGTGGGGAACTTCATACACTATCTATCAACGTTTCTGGCTGGTCTGGTGGTTGGTTTTGTGTCAGCATGGAGGCTCGCACTTCTGAGTGTTGCAGTGATTCCTGGGATTGCTTTTGCTGGTGGATTGTATGCTTACACACTCACTGGCCTCACATCAAAGAGTCGTGAATCTTATGCAAATGCAGGAATAATAGCTGAGCAGGCCATTGCTCAAGCTAGAACTGTTTACTCTTATGTTGGGGAGAGCAAGGCACTGAATTCTTATTCTGATGCAATACAAAACACTCTAAAACTTGGATACAAGGCAGGAATGGCCAAAGGGTTAGGCCTAGGATGCACATATGGAATAGCATGCATGTCTTGGGCACTGGTTTTCTGGTATGCTGGAGTTTTCATCAGGAATGGACAAACAGATGGAGGCAAGGCATTCACGGCTATTTTCTCAGCCATTGTTGGTGGCATGAGTTTGGGACAGTCCTTTTCCAACTTAGGTGCTTTCAGCAAAGGCAAAGCAGCGGGATACAAATTGATGGAGATCATCAATCAGAAACCCACCATAGTGGAAGATTCATCAGAAGGGAAGTGCCTAGCTGATGTTAATGGCAACATTGAATTTAAAGATGTTACTTTCAGCTACCCTTCGAGACCGGATGTGTTTATCTTTCGCAGTTTCTCAATCTTTTTCCCTGCTGGAAAAACTGTTGCGGTTGTTGGTGGCAGTGGATCTGGAAAGAGCACAGTTGTTTCCTTGATAGAAAGGTTCTATGATCCAAATGAAGGTCAGGTTCTGCTGGATAATGTGGACATCAAGAGTCTACAACTAAAATGGTTACGTGATCAAATTGGGTTGGTGAATCAAGAACCTGCACTCTTTGCTACTACCATTCTTGAGAATATACTCTATGGAAAAGCTGATGCAACTATGGCTGAAGTGGAAGCTGCTACTTCTGCTGCAAATGCTCATAGTTTTATCACCTTGCTTCCTAATGGTTACAACACTCAGGTAGGAGAGCGAGGAGTTCAATTATCTGGGGGCCAAAAGCAGAGAATTGCAATTGCCAGAGCCATGTTGAAGAACCCAAAGATCCTTCTACTAGATGAAGCAACTAGTGCTCTTGATGCAGGGTCTGAAAGCATAGTTCAAGAGGCACTAGACAGGCTCATGGTTGGAAGAACAACTGTGGTTGTGGCACATCGTCTATCAACCATAAGGAATGTTGATACCATTGCAGTTATACAACAAGGACAAGTAGTTGAGACAGGCACACATGAAGAACTCATTGCCAAGACAGGCACATATGCTTCACTCATTCGGTTCCAAGAAATGGTTGGAAATAGAGACTTCTCCAACCCATCAACCCGCAGGACTCGGTCATCGCGATTGAGCCATTCATTGTCAACAAAGTCCTTAAGTCTCAGGTCTGGAAGCCTGAGGAACTTGAGCTACCAGTATAGCACTGGTGCCGATGGCCGTATTGAGATGATATCAAATGCTGAAACAGACAAGAAAAATCCTGCCCCAGATGGATATTTCTTCAGGTTGCTCAAGCTGAATGCTCCTGAGTGGCCTTATTCAATCATGGGAGCTGTTGGTTCTGTTCTTTCTGGATTCATTGGCCCTACTTTTGCTATTGTTATGAGCAACATGATTGAGGTCTTTTACTTCAGAAATTATGCTTCCATGGAGAGGAAGACTAAGGAGTATGTCTTCATTTACATTGGTGCCGGTCTCTATGCAGTTGGTGCATACTTGATACAACATTACTTCTTTAGTATCATGGGAGAAAACCTCACCACAAGGGTCAGAAGAATGATGCTTGCCGCTATTTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCAAGCCTTGTTGCAGCTCGCCTTGCCACTGATGCAGCTGATGTCAAGTCTGCAATTGCTGAGAGGATATCAGTGATTCTGCAGAACATGACATCTCTCCTTACTTCTTTTATAGTTGCTTTCATAGTGGAATGGAGGGTTTCCTTGCTCATCTTGGCAACCTTCCCTCTACTTGTGCTAGCCAACTTTGCTCAGCAATTATCTCTAAAAGGGTTTGCTGGAGACACTGCAAAGGCTCATGCAAAGACAAGTATGATAGCAGGGGAGGGAGTGAGCAACATCAGAACAGTTGCAGCATTCAATGCTCAAACCAAGATGTTATCTGTGTTCTGCAATGAGCTTCGAGTGCCTCAGCGCCAGAGTCTGCGGCGGAGCCTCACATCCGGCTTCTTGTTCGGTCTCTCTCAGCTTGCCCTCTACGCCTCAGAGGCTCTCATTCTATGGTACGGTGCACATTTGGTGAGCAGAGGTGCTTCAACCTTCTCAAAGGTCATCAAGGTGTTTGTGGTGCTCGTGATCACGGCAAATTCGGTGGCGGAAACCGTCAGCCTGGCGCCGGAGATAATCCGCGGCGGGGAGGCCGTTGGGTCGGTGTTCTCAATCCTTGACCGGTCGACAAGGATTGACCCGGATGATCCCGATGCTGACCCGGTGGAGACTCTGCGCGGGGAGATCGAGCTGAGGCATGTCGATTTTGCATACCCTTCAAGGCCTGATGTGATGGTGTTCAAGGATTTGAGCCTGAGGATCCGTGCAGGGCAGAGCCAGGCTCTTGTGGGGGCAAGTGGATCAGGGAAGAGCTCTGTGATTGCTCTGATAGAGAGATTCTACGACCCTATTGCAGGGAAAGTGATGGTGGATGGGAAGGACATAAGGAAGTTGAACCTGAAGTCTCTGAGGCTGAAGATAGGGTTGGTGCAGCAAGAGCCAGCACTTTTTGCAGCAAGCATTTTCGAGAACATTGCATATGGAAAAGATGGTGCGAGCGAGGGTGAGGTGATAGAGGCTGCACGTGCAGCCAATGTGCATGGATTTGTGAGTGGCTTGCCAGAGGGTTACAAGACCCCGGTTGGTGAGAGAGGAGTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATTGCCATTGCTAGGGCAGTGCTCAAGGACCCTGCAATTCTCCTTCTGGACGAGGCCACAAGTGCCCTAGACGCTGAGTCGGAGTGTGTGCTACAAGAAGCCTTGGAGAGGCTAATGAGGGGTCGCACCACAGTGCTTGTGGCTCATCGTTTGTCCACCATTAGAGGGGTGGATTGCATCGGAGTGGTTCAAGATGGGCGCATTGTGGAGCAGGGTAGCCATGCAGAACTTGTGAGCAGGCCAGAGGGGGCATATTCTAGACTCTTGCAGCTGCAACATCATCACATATGA | 3750 | 0.4739 | MADAAEPKALPEAEKKKEQTLPFYKLFSFADKCDWMLMISGSLGAIVHGSSMPVFFLLFGEMVNGFGKNQMDLKKMTEEVSKYALYFVYLGLVVCLSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQARTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIVEDSSEGKCLADVNGNIEFKDVTFSYPSRPDVFIFRSFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKSLQLKWLRDQIGLVNQEPALFATTILENILYGKADATMAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKTGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFRNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQTKMLSVFCNELRVPQRQSLRRSLTSGFLFGLSQLALYASEALILWYGAHLVSRGASTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDADPVETLRGEIELRHVDFAYPSRPDVMVFKDLSLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFENIAYGKDGASEGEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHAELVSRPEGAYSRLLQLQHHHI* | 1250 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu4g0309 | 1249 | Gene3D | - | 1005 | 1246 | IPR027417 | - | |
Pvu4g0309 | 1249 | Gene3D | - | 360 | 623 | IPR027417 | - | |
Pvu4g0309 | 1249 | Pfam | ABC transporter | 384 | 529 | IPR003439 | GO:0005524 | |
Pvu4g0309 | 1249 | Pfam | ABC transporter | 1026 | 1174 | IPR003439 | GO:0005524 | |
Pvu4g0309 | 1249 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 38 | 335 | - | - | |
Pvu4g0309 | 1249 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 41 | 327 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Pvu4g0309 | 1249 | SUPERFAMILY | ABC transporter transmembrane region | 25 | 347 | IPR036640 | GO:0005524|GO:0016021 | |
Pvu4g0309 | 1249 | CDD | ABC_MTABC3_MDL1_MDL2 | 1007 | 1245 | - | - | |
Pvu4g0309 | 1249 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 353 | 599 | IPR027417 | - | |
Pvu4g0309 | 1249 | ProSitePatterns | ABC transporters family signature. | 1146 | 1160 | IPR017871 | GO:0005524 | |
Pvu4g0309 | 1249 | Pfam | ABC transporter transmembrane region | 43 | 312 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Pvu4g0309 | 1249 | Pfam | ABC transporter transmembrane region | 685 | 956 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Pvu4g0309 | 1249 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 685 | 972 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Pvu4g0309 | 1249 | SUPERFAMILY | ABC transporter transmembrane region | 666 | 991 | IPR036640 | GO:0005524|GO:0016021 | |
Pvu4g0309 | 1249 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 674 | 990 | - | - | |
Pvu4g0309 | 1249 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 14 | 1247 | IPR039421 | - | |
Pvu4g0309 | 1249 | SMART | AAA_5 | 389 | 575 | IPR003593 | - | |
Pvu4g0309 | 1249 | SMART | AAA_5 | 1034 | 1220 | IPR003593 | - | |
Pvu4g0309 | 1249 | PANTHER | ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED | 14 | 1247 | - | - | |
Pvu4g0309 | 1249 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 997 | 1245 | IPR027417 | - | |
Pvu4g0309 | 1249 | CDD | ABC_MTABC3_MDL1_MDL2 | 362 | 599 | - | - | |
Pvu4g0309 | 1249 | Gene3D | ABC transporter type 1, transmembrane domain | 978 | 1004 | IPR036640 | GO:0005524|GO:0016021 | |
Pvu4g0309 | 1249 | Gene3D | ABC transporter type 1, transmembrane domain | 85 | 977 | IPR036640 | GO:0005524|GO:0016021 | |
Pvu4g0309 | 1249 | ProSitePatterns | ABC transporters family signature. | 501 | 515 | IPR017871 | GO:0005524 | |
Pvu4g0309 | 1249 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1009 | 1243 | IPR003439 | GO:0005524 | |
Pvu4g0309 | 1249 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 362 | 598 | IPR003439 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu4g0309 | Pvu-Chr4 | 2917932 | 2929066 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu4g0309 | 2 | 1245 | Calmodulin-binding Proteins | AT2G36910 | 53.481 | 0.0 | 1346 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu4g0309 | K05658 | - | gmx:100797124 | 2283.83 |