Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0306 ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCACGACCACCACCAACTACACCTGCGCTCCACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCTGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAGCTAGGGGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCACTTGAGAAGAGCTTTGAATTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCCAAGGCTTTGGGGCTTCAACCAAGGCAAATCGCTATATGGTTCCAGAACAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAGCAGTTTGAAGCTGTGAAAGCTGATAATGACTCCCTCAAGGCTCAGAATCAGAAATTACATGCAGAGCTACAGAATCTGAAAAATAGGGACTGCTGTGAAACCAGAACAGTTAGCCTGAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGACAGAACACCAGTGATGAACAGCCCTGTGTCTTCACAGAATGGAAAAAGCCTTGTACCAACTTCCCTTAAGCCAACAAGCATGACTCAACTCCTCCAATGCTCATCAAGATCAGATCTTCAAGATGAGAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGACTGAGCAGCAGCACCAGTTTCATTAA 828 0.4722 MAFPPSHTFMFQTHEDHDHHQLHLRSTSSSLNAFPSFPPHHFQGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELQNLKNRDCCETRTVSLKKETEGSWSNGSNNSSEINLDRTPVMNSPVSSQNGKSLVPTSLKPTSMTQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWTEQQHQFH* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0306 275 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Pvu4g0306 275 MobiDBLite consensus disorder prediction 190 226 - -
Pvu4g0306 275 SUPERFAMILY Homeodomain-like 72 138 IPR009057 -
Pvu4g0306 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 275 IPR045224 GO:0003700
Pvu4g0306 275 Coils Coil 128 176 - -
Pvu4g0306 275 SMART HOX_1 79 140 IPR001356 GO:0003677
Pvu4g0306 275 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 275 - -
Pvu4g0306 275 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Pvu4g0306 275 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Pvu4g0306 275 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Pvu4g0306 275 CDD homeodomain 81 137 IPR001356 GO:0003677
Pvu4g0306 275 Gene3D - 73 145 - -
Pvu4g0306 275 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Pvu4g0306 275 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0306 Pvu-Chr4 2824942 2828220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0306 1 269 Homeobox Transcription Factor Family AT3G01220 52.347 6.45e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu4g0306 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0306 K09338 - gmx:100790803 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0306 4 2824942 2828220 Pvu8g0429 8 3657491 3659729 PCT