Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0303 ATGAGGAGCATTGGTGGTGTTGAGGCTGGTAAATCCAATGAAGGAAAGAAAAACAAAGATGGTGCTCAAGGAGCCATTGAAGAAGGTTCAAGGTTTTGGAAGAAATTGAAGATTTTTCTGGGTTGCATGATTCTCAGTTCAAAAGAGAAAGGAAACTCCAGTGACAAAAGCACACAAGGAAGAAATGTTAGAAAAGATATTGTTAGGCAGAAGAGGTCAAAAAGAAGCTCATCCACCAACAAAGACGAGGAATTGATTGCAAATTCTTCCAATCTTCGGAGGTTCACTTTTCACGATATTCAGAATGCAACAAGCAATTTCGATTCCAGGACTTTTCTTGGTAGGGGAGGTTTTGGAACTGTGTTCAAAGGTTGGGTTGATGAAAGAGAGAACTACTCAGCAGTCTCTCCAACAAGGATTCCGGTAGCAGTGAAGACTCTAAACCCAAATGGATTTCAAGGTCATAAACAATGGCTTGCTGAAATTAAATACCTGGGTGAACTCTATCATCCAAATCTAGTAAGATTGGTGGGCTATTGCATGGAGGAAGATAAAAGGGTACTCATATACGAATACATGTGTCGAGGAAGCTTAGAGAAGTATCTGTTCCAAAGAGGAACTATGCGACTTCCATGGCGTATCAGGCTGAAAATTGCAATGGATGCTGCTAATGGTCTGACATTTCTGCACGAGGAAGCTTCACGAGCAGTGATCTTTCGAGATTTCAAGACATCTAATATCCTATTGGACAAGGACTTCAATGCAAAACTTTCAGATTTTGGGTTTGCAAAAGATGCTCCAGTGGGAGATAAAAATCATGTATCTACAGAGGTAATGGGAACAGAAGGCTATATAGCCCCTGAGTATGTGATGACAGGACATCTTACATCCAAGAGTGACGTGTATAGCTTTGGGATGGTCCTCCTTGAAATGGTGACAGGAAGAAGAGCTGTGGATCAAAAGAGGCCTGCAAAAGAGAAAAACTTGGTAGATTGGTTGCGTCCTCGTATTAGGAGTAAAGAGAGTTTTCATCATGTGATGGATCCTAGATTTGAAGGCCAATATCCAATTAAACATGCCTATAGGGCAATGAAGTTGGTTGTTCACTGTCTTCGCCATGATCCAACAGCAAGACCCCTTATGAGTGAAGTGGTTGCTGAGTTGAAGTCTTTGATAGATGATGGCATGCTTTATAGTCCTTCAAATTCAGCTACCTCACCTTCAATCCCTTCAACCTCACTTGGGAGAATTCATGTAGGTCCTTCCAACCATGTTGCTGCCAACAAGTATGGCCTTAGAAATAGTTCAGAACCAAATGTTCCATCGCGTTTTCAAGCCTCACCATTGGACCTAGATAGCCCTCTAACTCCACCTTCTCAGAATCCTAGTGTTGAACAATAA 1401 0.4168 MRSIGGVEAGKSNEGKKNKDGAQGAIEEGSRFWKKLKIFLGCMILSSKEKGNSSDKSTQGRNVRKDIVRQKRSKRSSSTNKDEELIANSSNLRRFTFHDIQNATSNFDSRTFLGRGGFGTVFKGWVDERENYSAVSPTRIPVAVKTLNPNGFQGHKQWLAEIKYLGELYHPNLVRLVGYCMEEDKRVLIYEYMCRGSLEKYLFQRGTMRLPWRIRLKIAMDAANGLTFLHEEASRAVIFRDFKTSNILLDKDFNAKLSDFGFAKDAPVGDKNHVSTEVMGTEGYIAPEYVMTGHLTSKSDVYSFGMVLLEMVTGRRAVDQKRPAKEKNLVDWLRPRIRSKESFHHVMDPRFEGQYPIKHAYRAMKLVVHCLRHDPTARPLMSEVVAELKSLIDDGMLYSPSNSATSPSIPSTSLGRIHVGPSNHVAANKYGLRNSSEPNVPSRFQASPLDLDSPLTPPSQNPSVEQ* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0303 466 MobiDBLite consensus disorder prediction 49 85 - -
Pvu4g0303 466 CDD STKc_IRAK 113 391 - -
Pvu4g0303 466 MobiDBLite consensus disorder prediction 431 466 - -
Pvu4g0303 466 Gene3D Transferase(Phosphotransferase) domain 1 193 400 - -
Pvu4g0303 466 Pfam Protein tyrosine and serine/threonine kinase 112 388 IPR001245 GO:0004672|GO:0006468
Pvu4g0303 466 SUPERFAMILY Protein kinase-like (PK-like) 75 386 IPR011009 -
Pvu4g0303 466 ProSitePatterns Protein kinases ATP-binding region signature. 113 145 IPR017441 GO:0005524
Pvu4g0303 466 ProSiteProfiles Protein kinase domain profile. 107 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0303 466 MobiDBLite consensus disorder prediction 452 466 - -
Pvu4g0303 466 Gene3D Phosphorylase Kinase; domain 1 76 192 - -
Pvu4g0303 466 MobiDBLite consensus disorder prediction 59 81 - -
Pvu4g0303 466 MobiDBLite consensus disorder prediction 1 24 - -
Pvu4g0303 466 PANTHER TYROSINE KINASE FAMILY PROTEIN 69 412 - -
Pvu4g0303 466 PANTHER OS01G0588500 PROTEIN-RELATED 69 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0303 Pvu-Chr4 2776163 2780449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0303 60 391 Glycoside Hydrolase AT3G07070 46.269 7.52e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu4g0303 PK_Tyr_Ser-Thr 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0303 - - var:108345092 721.85