Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0294 ATGTTGGGAGGAACAATGGCATCAAAGGTTGTCTTTTCCCTGTTGGCCACTCTCGCCATTACCATTCCCTGCCTCGAGGCTGGCATTGCAGAGTTCGATGAGTTTCTCAGAGCTCAATCTGAGAAAGCCCACGAAATCGCTCTTCAATCCTACGTACCAACTCCTGAGTTCGTCACCAATGACCTCAATTACCACGTTCATCTTTCCATGCAGAACGTCACAAGAAGGGGACTGAAGGAAGGGAACAATGCCATTGGGAAGCCCTGTGAGAGCAGCAACCCCATTGACAACTGCTGGAGGTGCAACAAAGACTGGGCCAAGGACAGGTACCGGCTAGCCAAATGCGGAAAAGGGTTCGGAAGACGCGCCGTCGGAGGCCTCGGTGGACCCATCTATGTCGTCACTGATAACTCCGATGAGGATATGATTAACCCCAAACCAGGAACCCTCCGTTATGCTGTGACTCAAAAGGGTCCTCTTTGGATCACCTTCGAACGCAGCATGATCATCAGTCTGCAACAGGAGCTGATGATTTCCTCCGACAAGACCATCGATGGTCGTGGCGCCAATGTTCAGATCAGGGACGGTGGTGGCCTCACCATGCAGTTCGTGAACAACGTTATCATCCACGGGATTCGCGTGAAGGACATCGTGCCTAAGGAGGGTGGCCTGATCAGAGACTCGTACAACCACATTGGACAGAGAACGAGGAGTGATGGTGATGCCATCTCCGTTTTCGGTGCCTCCAACATCTGGATCGATCATGTTTCGCTATCTAACTCCGCTGACGGACTCATCGATGTCATCCAAGGCTCCACCGCCATCACCATCTCCAACTGCCACATGACCAGACATAACGACGTGATGCTGTTTGGTGCTGCTGACAGCTACACTGGAGACAAGATCATGCAGATTACAGTGGCATTCAACCACTTCGGGCAGGGACTTATCCAGAGGATGCCAAGGTGCAGAATGGGATTCTTCCACGTTCTGAACAACGATTACACTCACTGGATGATGTACGCAATAGGAGGAAGCGCAGGGCCTACGATTCTGAGCCAGGGAAACAGATTCATCGCCCCCAACAACGATGCTGCAAAGGAGATAACCCACAGAGACTACGCAACACCAGAAGAGTGGAAGAACTGGCAATGGCAATCAGACATGGACCTTTTGATGAACGGTGCGACCTTCAACAGTTCAGGATCTCCAATAGCCATGAAACACAAGAAGGGTTTCATAATGAAGCCAAGAGACGGCACTCACGTCAGCAGACTCACACGCCATTCTGGTGCCCTCAACTGCTTTGTTGGCTTGCCTTGCTAG 1326 0.5151 MLGGTMASKVVFSLLATLAITIPCLEAGIAEFDEFLRAQSEKAHEIALQSYVPTPEFVTNDLNYHVHLSMQNVTRRGLKEGNNAIGKPCESSNPIDNCWRCNKDWAKDRYRLAKCGKGFGRRAVGGLGGPIYVVTDNSDEDMINPKPGTLRYAVTQKGPLWITFERSMIISLQQELMISSDKTIDGRGANVQIRDGGGLTMQFVNNVIIHGIRVKDIVPKEGGLIRDSYNHIGQRTRSDGDAISVFGASNIWIDHVSLSNSADGLIDVIQGSTAITISNCHMTRHNDVMLFGAADSYTGDKIMQITVAFNHFGQGLIQRMPRCRMGFFHVLNNDYTHWMMYAIGGSAGPTILSQGNRFIAPNNDAAKEITHRDYATPEEWKNWQWQSDMDLLMNGATFNSSGSPIAMKHKKGFIMKPRDGTHVSRLTRHSGALNCFVGLPC* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0294 441 SMART amb_all 167 364 IPR002022 -
Pvu4g0294 441 SUPERFAMILY Pectin lyase-like 93 408 IPR011050 -
Pvu4g0294 441 Pfam Pectate lyase, N terminus 29 78 IPR007524 GO:0030570
Pvu4g0294 441 PANTHER PECTATE LYASE 18-RELATED 7 441 IPR045032 GO:0030570
Pvu4g0294 441 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Pvu4g0294 441 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Pvu4g0294 441 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Pvu4g0294 441 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Pvu4g0294 441 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Pvu4g0294 441 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Pvu4g0294 441 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Pvu4g0294 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Pvu4g0294 441 Gene3D - 92 434 IPR012334 -
Pvu4g0294 441 PANTHER PECTATE LYASE 7 441 - -
Pvu4g0294 441 Pfam Pectate lyase 175 358 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0294 Pvu-Chr4 2692637 2694516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0294 11 441 Polysaccharide Lyase AT1G14420 57.684 2.26e-180 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0294 K01728 - gmx:100785801 731.095