Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0292 ATGGCCGACGGCCATCTCTTCAACAACATCACCCTGGGAGGCCGCGGCGGCACCAATTCAGGACAGATAAGGATATATTCCGGAGGAATTATATGGAAGAGACAGGGTGGTGGTAAATTAATTGAAGTTGATAAATCTGACATAGTGGGGGTGACATGGATGAAGGTTCCAAGAACTAACCAACTTGGGGTTCAAATCAAAGATGGATTGTACTACAAGTTCACAGGATTTCGTGACCAGGATGTTGCAAGTTTGACCAATTTTTTTCAAAACACCTGTGGAATATCAGTTGAGGAGAAACAGCTTTCTGTTAGCGGGCGTAATTGGGGAGAAGTTGATCTAAATGGGAATATGCTGGCTTTTATGGTTGGTTCAAAGCAAGCTTTTGAAGTGTCTTTAGCAGATGTCTCTCAAACACAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCACGTGGATGATACAACAGGAGCTAATGAGAAAGATTCATTGATGGAGATAAGTTTCCATATACCAAATTCCAACACCCAGTTTGTTGGTGATGAAAATCGTCCTCCTGCTCAGGTTTTCCGTGACAAAATTATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGGGGACGATACAGTGTTGAGTTACACATGTCATTCTTGCGGCTTCAGGGACAAGCTAATGATTTCAAAATTCAGTATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTTGTTATCATTAGCCTTGACCCCCCTATTCGGAAGGGACAAACTTTGTATCCTCATATTGTGATGCAGTTCGAAACTGATTATGTTGTTCAAAGTGAATTGGCAATAACTGAAGATCTTTATAACTCAAAGTATAAGGATAAATTGGAGCTGTCTTATAAGGGACTTATTCATGAAGTGTTCACCACAATATTACGTGGCTTGTCAGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAGTTTGAGAGGCATGCTGCTGGTGGATCCAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAACAAGAGCATCTATTCCGTAATATTCAGAGAAATGAGTACCACAATCTGTACGAATTTATCAGTTCAAAGGGCTTGAAAATTATGAATTTAGGAGATGCCCAACCCATTGTTGGTATTAAGAAGGTTCTTGAGAATGATGACGATGATGCTGTTGATCCACATCTTGAACGTATTAAAAATGAAGCTGGTGGTGGTGAAAGTGATGAGGAGGATTCCGATTTTGTTGCCGACAAGGATGATGAAGGTTCTCCTACTGATGATTCTGGGGCAGATGATTCTGATGGTAGTGATAGTGGTGATGAGAAAGAGAAGCCTGCCAAAAAGGAACCAAAGAAGGACCTGCCTTCTAAGGCATCTACTTCAAAAAAGAGATCAAAAGATGATGAGGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCCGGTTTCATGTTCTTTTCTAAATTGGAAAGAGAGAATCTAAAGAAAAGTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGTGGAAGAGAAGGAACCATACGAGGCAAAAGCACGTGAAGATAAAAAACGTTACAAGGATGAAATCAGTGGCTACAAGAATCCCCAACCCATGAATATTGACTCTGGAAATGAATCTGACAGTGCTTAA 1923 0.4041 MADGHLFNNITLGGRGGTNSGQIRIYSGGIIWKRQGGGKLIEVDKSDIVGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVASLTNFFQNTCGISVEEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSELAITEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDAQPIVGIKKVLENDDDDAVDPHLERIKNEAGGGESDEEDSDFVADKDDEGSPTDDSGADDSDGSDSGDEKEKPAKKEPKKDLPSKASTSKKRSKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKSNPGISFTDVGRVLGEKWKKMSVEEKEPYEAKAREDKKRYKDEISGYKNPQPMNIDSGNESDSA* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0292 640 SUPERFAMILY PH domain-like 206 440 - -
Pvu4g0292 640 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 556 624 IPR009071 -
Pvu4g0292 640 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 638 - -
Pvu4g0292 640 CDD HMGB-UBF_HMG-box 556 621 - -
Pvu4g0292 640 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Pvu4g0292 640 SUPERFAMILY HMG-box 543 625 IPR036910 -
Pvu4g0292 640 MobiDBLite consensus disorder prediction 468 563 - -
Pvu4g0292 640 Gene3D - 339 448 IPR011993 -
Pvu4g0292 640 Gene3D High mobility group box domain 539 634 IPR036910 -
Pvu4g0292 640 Pfam POB3-like N-terminal PH domain 7 99 IPR035417 -
Pvu4g0292 640 CDD PH2_SSRP1-like 342 441 - -
Pvu4g0292 640 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 638 - -
Pvu4g0292 640 CDD PH1_SSRP1-like 207 340 - -
Pvu4g0292 640 SMART hmgende2 555 625 IPR009071 -
Pvu4g0292 640 Pfam HMG (high mobility group) box 556 624 IPR009071 -
Pvu4g0292 640 SMART Rtt106_2 348 441 IPR013719 -
Pvu4g0292 640 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Pvu4g0292 640 MobiDBLite consensus disorder prediction 506 547 - -
Pvu4g0292 640 MobiDBLite consensus disorder prediction 597 621 - -
Pvu4g0292 640 Gene3D - 1 92 IPR011993 -
Pvu4g0292 640 Gene3D - 199 338 - -
Pvu4g0292 640 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Pvu4g0292 640 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Pvu4g0292 640 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Pvu4g0292 640 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Pvu4g0292 640 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Pvu4g0292 640 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Pvu4g0292 640 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Pvu4g0292 640 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Pvu4g0292 640 MobiDBLite consensus disorder prediction 626 640 - -
Pvu4g0292 640 MobiDBLite consensus disorder prediction 597 640 - -
Pvu4g0292 640 Gene3D - 95 179 IPR038167 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0292 Pvu-Chr4 2670181 2676701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0292 552 624 ARID Transcription Factor Family AT1G04880 41.096 9.67e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pvu4g0292 POB3_N 1.8e-22 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0292 K09272 - gmx:100805034 1174.07