Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0290 ATGGGGTTTGGGAGCAATGCAGTTCAAGCAGGGAGTTTGGATGTGGAAAAGTCAAAGGGCAAGAAGAACAAGGAAGGTGGTGGGAAGGAGAGAAAATGGGGGTTTAGATTTAGCCTCTTTGGGAGTTGCATACCTTCAAGATCAAAAGTTGATAGCACCACCATTAGTGGCACTAGTGCTCCTAATAATGGTGAAAATATCAAGTCAGTGATAACTGAATCAGAGGAAAACAAATCTGCATCTGATAGAATCACAAAGGAAACAGTTGCTCCTCCAGAGTCCTCTACGACAACTACTGATGCAGAAAGTAACCCTTCCACACCAATATTCAGTGAGGAGCTGAAGGTTGCTTCTTGCTTGAGAAAATTCACATTCAATGGACTTAAGGTGGCAACTAGGAATTTTAGACCAGAGAGTCTTCTTGGTGAAGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATTGAAGAGAATGGAACTGCACCTGTGAAACCAGGTACCGGGCTTACGGTTGCGGTCAAGACCCTCAACCACAATGGACATCAGGGTCACAAAGAGTGGCTTGCTGAGTTGAATTATCTTGGTGATCTTGTCCATCCAAATCTTGTTAAACTGGTTGGTTTCTGTATTGAAGGTGACCAAAGATTACTGGTTTATGAGTTTATGCCCCGAGGCAGTTTGGAGAATCACCTCTTTAGAAGACCCCTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCCAAGGGTCTTGCTTTTCTCCACCAAGAGGCTCAAAGACCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGGAATACAATGCCAAGCTCTCTGATTTTGGACTTGCCAAAGATGGCCCCGAGGGGGAAAAGACACATGTATCAACAAGAGTTATGGGAACATATGGTTATGCTGCTCCCGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTACAGCTTTGGAGTAGTGCTACTTGAAATGCTCACTGGTCGGAGATCTATTGACAAGAAAAGACCAAATGGGGAACACAATCTGGTGGAGTGGGCAAGACCTGTTCTTGGAGACCGGAGGATGTTCTACCGGATAATTGATCCCCGTCTCGAAGGCCACTTCTCGGTTAAAGGGGTGCAAAAAGCTGTACAGCTTGCTGCTCAATGCCTTAGCCGTGATCCAAAATCCAGACCCTTGATGAGTGATGTTGTTCAAGCTTTAAAGCCTTTACCAAGCCTCAAGGACATGGCTATCTCATCTTATCACTTCCAGATTGCTCGAGTAGACCGAACCATGTCCATGCCGAATCATAAAAACGGCATTAGAACACAGTTAGTATCAGTGCCAAGGAAGGGTCAAGCTGTAAGGACATTGTCTAGTTCAAATGTTCCACATGGTTCTCCATATATTCGATATACCAAGTCTCCAAAACCTATTGGGTAA 1467 0.441 MGFGSNAVQAGSLDVEKSKGKKNKEGGGKERKWGFRFSLFGSCIPSRSKVDSTTISGTSAPNNGENIKSVITESEENKSASDRITKETVAPPESSTTTTDAESNPSTPIFSEELKVASCLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHNGHQGHKEWLAELNYLGDLVHPNLVKLVGFCIEGDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHQEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKKRPNGEHNLVEWARPVLGDRRMFYRIIDPRLEGHFSVKGVQKAVQLAAQCLSRDPKSRPLMSDVVQALKPLPSLKDMAISSYHFQIARVDRTMSMPNHKNGIRTQLVSVPRKGQAVRTLSSSNVPHGSPYIRYTKSPKPIG* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0290 488 SUPERFAMILY Protein kinase-like (PK-like) 117 415 IPR011009 -
Pvu4g0290 488 MobiDBLite consensus disorder prediction 15 30 - -
Pvu4g0290 488 Gene3D Phosphorylase Kinase; domain 1 115 220 - -
Pvu4g0290 488 MobiDBLite consensus disorder prediction 1 30 - -
Pvu4g0290 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Pvu4g0290 488 ProSiteProfiles Protein kinase domain profile. 135 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0290 488 MobiDBLite consensus disorder prediction 45 70 - -
Pvu4g0290 488 MobiDBLite consensus disorder prediction 43 107 - -
Pvu4g0290 488 Pfam Protein tyrosine and serine/threonine kinase 139 415 IPR001245 GO:0004672|GO:0006468
Pvu4g0290 488 PANTHER RECEPTOR-LIKE KINASE PLANT 65 480 - -
Pvu4g0290 488 MobiDBLite consensus disorder prediction 88 107 - -
Pvu4g0290 488 CDD STKc_IRAK 141 418 - -
Pvu4g0290 488 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524
Pvu4g0290 488 PANTHER OS01G0588500 PROTEIN-RELATED 65 480 - -
Pvu4g0290 488 Gene3D Transferase(Phosphotransferase) domain 1 221 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0290 Pvu-Chr4 2648982 2653890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0290 121 431 Glycoside Hydrolase AT3G07070 56.688 1.17e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu4g0290 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0290 - - gmx:100499647 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0290 4 2648982 2653890 Pvu8g0446 8 3782505 3786799 PCT