Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0272 ATGGGAAGGCCTCCTTGTTGTGACAAATCCAATGTCAAAAGGGGTCTTTGGACTCCTGAGGAAGATGCTAAAATACTTGCCTATGTAGCCAATCATGGAACTGGAAACTGGACATTGGTTCCAAAGAAAGCAGGGCTGAATAGGTGTGGTAAAAGCTGCAGGCTCAGATGGACCAACTATCTGAGACCTGACCTCAAGCATGATAGTTTTACTCCCCAAGAAGAAGAGCTCATTATTAACCTTCATGGAGCCATAGGAAGCAGATGGTCTTTGATTGCAAGAAGATTACCTGGGAGAACAGACAATGATGTGAAGAACTACTGGAACACAAAGCTAAGGAAGAAGCTTATGAAGATGGGAATTGATCCAGTGACTCATAAGCCAGTATCACAAGTCCTCTCTGACTTGGGAAGCATTAGTGGCCTCCCTAACAGCACCACCACTAACCAAATGGCCTTTGTTAACAAGGACTTGATGATGAGCAACATGGTACCAACAAAAACTGAACCATCAGGTTCCAATAAGTCAATGGTGGAGAACACACAAGAGGATCAAGTTCACTCATGGGAACACCACTTTCCTTACCAAGTCCTCACCACAGAAAATGTCCAACCACATGTCTTCAGTGAAGCTGCATCCTCCACCTCATCCTCATCTTCCTCCAACCTCACACACTTAGGCTCACCACAGTCCTACTCTTGCCAAACCCCTCATTGTTCCTCCTTTGATTGGAGTGAGTTTCTTCACAGTGACTCATTTATGTGGTCACTGAACCCCTCAAGTCTGGTGCAAAGTGAAGCTGATCTTTCCATCAATGCCAAAAGCAATGGCCATGACAAACAAGGAGTTGCTTCAATTGAGGGTTGTTGTGGTGCAGGCATGGAATATCAAACTAAAAAGCAATGTGAAGGTCATTCATTTGTAGATGGTATTTTGGACAGGGACAGTGAGTTAAGAGCAGCATTCCCTGAACTTTTGGATGCTTCTTTTGACTACTAA 999 0.4424 MGRPPCCDKSNVKRGLWTPEEDAKILAYVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEELIINLHGAIGSRWSLIARRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISGLPNSTTTNQMAFVNKDLMMSNMVPTKTEPSGSNKSMVENTQEDQVHSWEHHFPYQVLTTENVQPHVFSEAASSTSSSSSSNLTHLGSPQSYSCQTPHCSSFDWSEFLHSDSFMWSLNPSSLVQSEADLSINAKSNGHDKQGVASIEGCCGAGMEYQTKKQCEGHSFVDGILDRDSELRAAFPELLDASFDY* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0272 332 PANTHER F14D16.11-RELATED 1 332 - -
Pvu4g0272 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu4g0272 332 CDD SANT 69 112 IPR001005 -
Pvu4g0272 332 Gene3D - 68 131 - -
Pvu4g0272 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pvu4g0272 332 PANTHER F14D16.11-RELATED 1 332 - -
Pvu4g0272 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu4g0272 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu4g0272 332 CDD SANT 17 61 IPR001005 -
Pvu4g0272 332 SMART sant 13 63 IPR001005 -
Pvu4g0272 332 SMART sant 66 114 IPR001005 -
Pvu4g0272 332 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Pvu4g0272 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu4g0272 332 Gene3D - 7 67 - -
Pvu4g0272 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0272 Pvu-Chr4 2492826 2494518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0272 1 332 MYB Transcription Factor Family AT3G28470 50.581 9.34e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu4g0272 Myb_DNA-binding 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0272 K09422 - gmx:100815077 578.556