Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0261 ATGGGTGGTGGTGGTGGTGGTGACCATAACAGTTCTGGTTCCATGGCTATGAAGAACAAGAAGAGTAGTGGCTCTATTCGATCCATTTTTATGCATGCTGATGGCCAGGATATGTTTCTCATGATTTTGGGATTGGTTGGAGCCATTGGTGATGGCATAGGCACCCCTTTGGTGTTGTTTATCACCAGCAAAATTATGAACAATATTGGTAGTTTTTCTGGTGGAATAGATAGCTCTTTCATCCATGCCATCAATCAGAATGCTGTGGTTTTGTTATATTTGGCTAGTGGGTCTTTTGTTGCTTGTTTTCTAGAGGGTTATTGTTGGACAAGAACTGGTGAAAGACAAGCTGCGAGAATGAGAGTGAGTTACCTAAAGGCAGTGTTGAGGCAAGAAGTTGCATACTTTGATTTGCATGTCAGTAGCACATCTGAGGTCATCACCAGTGTCTCTAATGACAGCCTCGTAATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCCTCTATGTTTGTGGGGAGCTACATAGTGGGTTTTGCATTATTATGGAGATTGACCCTTGTGGGGTTCCCTTTTGTGGCTCTACTTGTGATCCCTGGTTTTATGTATGGGAGGACCCTAATGGGGTTGGCTAGCAAGATAAGAGAAGAGTACAACAAGGCTGGTACAATAGCAGAACAGGCAATATCTTCCATCAGAACCGTCTACTCCTTTGTGGGAGAAAGCAAGACAATAGACGCTTTCTCTGATGCTCTACAAGGATCAGTAGAGTTAGGACTGAGACAAGGCTTGGCAAAAGGCTTAGCTATTGGAAGCAATGGTGTTGTGTTTGCTATATGGGCTTTCATATCCTATTATGGTAGCAGATTGGTCATGTACCATGGTGCTAAAGGTGGAACTGTGTTTGCAGTTGGTGCAGCCATAGCACTTGGAGGATTGGCCTTAGGTGCTGGTTTGTCGAACGTGAAGTACTTCTCAGAGGCAAGCAGTGCAGGAGAACGCATAATGGAAGTGATAAAAAGGGTTCCGAAGATTGATTCAGAGAACATGGGAGGGGAGATTCTGGAGGAGGTTGGTGGGGAAGTGGAGTTTGTGCATGTGGACTTTGTGTACCCTTCAAGGCCTGACAGTGTGATTCTGAAGGATTTTAGCCTGAGGGTTCCTGCAGGGAAAACAGTGGCACTGGTTGGAGGGAGTGGCTCAGGAAAATCGACTGTGATATCACTTCTGCAGAGGTTCTATGACCCAGTTGAGGGAGAGATACGTGTTGATGGTGTGGCCATTCATAGGTTGCAACTGAAGTGGTTGAGGTCTCAAATGGGGTTGGTGAGTCAAGAGCCTGCACTGTTTGCGACCAGCATTAAGGAGAATATACTGTTTGGAAAAGAAGATGCGACTGAGGAAGAGGTTATCGAGGCTGCAAAAGCTTCCAATGCTCATACTTTCATCTCACACTTGCCACAAGGATATCATACTCAGGTGGGGGAGAGAGGAATTCAAATGTCAGGGGGACAAAAGCAAAGAATTGCTATAGCACGAGCAATAATAAAGAAGCCACGAATTCTCTTGCTAGATGAAGCAACAAGTGCCCTGGATTCTGAATCCGAACGAGTAGTGCAAGAAGCATTGGACAAAGCAGCAGTGGGGCGCACCACCATCATCATTGCTCATCGATTATCCACCATAAGAAATGCAGATGTGATTGCTGTGGTGCAAAGTGGGAAGATCATGGAAATGGGAGAAGACACCCCTTTTCACCCTCATCCTGCATCCTCATCATCATCCATAGCAAACAAGGATAATCACAACACAAGCAGCCGGAGGCTTTCTCTTGTGAGTCAGTCTAGCTCTGCCAACTCAATCCCTCGTGTTGGTGGTGGTGATGATGTTGTTGAAGAGGTTGTTGTGGAAGATAAGAAGCTGCCACTTCCCTCCTTTCGAAGATTGCTGGCACTGAATGTTCCTGAGTGGAAGCAAGCATGTATGGGGTGTTTGAATGCAGTGTTGTTTGGTGCAATACAGCCTGTGTATGCATTTTCAATGGGGTCTGTGATATCTGTTTATTTTCTCCAAGACCATGATGAGATAAAAGAGAAAACCAGGATCTACTCGCTTTGTTTTCTGGGGTTGGCTGTGTTCTCTTTGGTGGTTAATATCCTCCAACACTATAACTTTGCTTACATGGGAGAGTACCTAACCAAAAGGATCAGAGAACGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACTGGTGCTGTTTGTTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGGTCTTTGGTGGGAGACAGATTGGCTCTAGTGGTGCAAACCATTTCTGCAGTGGTGATAGCTTTCACTATGGGCCTAGTCATTGCATGGAGGTTGGCCATTGTTATGATAGCAGTTCAACCCATTATCATAGCCTGCTTCTACACAAGACGTGTCCTTCTCAAGAGCATGTCTAGCAAGGCCATCAAGGCCCAAGATGAAAGTAGCAAGATAGCTGCAGAAGCTGTTTCCAACCTTAGAACAATCACAGCATTTTCTTCCCAAGAGAGAATCCTAAAGATGCTTGAAAAGGCTCAAGAGGGACCAAGTCATGAAAGCATTCGCCAATCATGGTTTGCAGGTGTTGGTCTTGCCTGTTCCCAAAGCCTTACATTTTGTACTTGGGCCTTAGACTTTTGGTATGGAGGAAAGCTTGTGTTTCAAGGGGTCATCAATGCCAAAGCATTGTTTGAGACTTTCATGATCTTGGTGAGCACAGGTAGGGTCATTGCAGATGCTGGCAGCATGACCAATGACCTTGCCAAAGGGGCTGATGCTGTGGGCTCTGTTTTTACAATCCTAGATAGGTACACAAAAACTGAGCCTGATGACATAGATGGGTACAAGCCTGAAAAATTGACAGGGAAAATAGAGCTCCATGACGTCCATTTTGCATACCCAGCTAGGCCCAATGTGATGATCTTTCAAGGCTTCTCAATCAAAATAGATGCAGGCAAATCAACAGCATTGGTAGGGCAAAGTGGTTCTGGCAAATCAACAATAATAGGCCTAATAGAGAGATTCTATGACCCCCTAAAAGGGATAGTGACCATAGACGGTAGAGACATAAAATCATATCACCTTAGGTCAATTAGGAAGCACATTGGTCTGGTAAGCCAAGAGCCAACATTGTTTGGTGGGACCATAAGGGAAAATATTGCATATGGAGCATCTAACAAGGTTGATGAAACTGAGATCATAGAAGCAGCAAGAGCAGCTAATGCTCATGATTTCATTTCAAGCCTAAAGGAGGGCTATGAAACATGGTGTGGAGACAGAGGAGTGCAACTCTCAGGGGGTCAAAAGCAAAGAATTGCAATAGCAAGAGCCATATTGAAGAACCCAGAAGTGTTGTTGCTGGATGAAGCCACCAGTGCTCTTGATAGCCAATCAGAGAAATTGGTGCAAGATGCTCTAGACAGGGTGATGGTAGGGAGAACTAGTGTGGTGGTGGCTCACAGGTTAAGCACAATACAAAACTGTGATCTAATTGCTGTGTTAGACAAGGGAAAAGTGGTGGAGAAAGGGACTCACTCATCTTTGTTGGCTCAGGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTACAAAGAAGACCAACAAAGCATGAAGGTTAA 3708 0.4458 MGGGGGGDHNSSGSMAMKNKKSSGSIRSIFMHADGQDMFLMILGLVGAIGDGIGTPLVLFITSKIMNNIGSFSGGIDSSFIHAINQNAVVLLYLASGSFVACFLEGYCWTRTGERQAARMRVSYLKAVLRQEVAYFDLHVSSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFVGSYIVGFALLWRLTLVGFPFVALLVIPGFMYGRTLMGLASKIREEYNKAGTIAEQAISSIRTVYSFVGESKTIDAFSDALQGSVELGLRQGLAKGLAIGSNGVVFAIWAFISYYGSRLVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYFSEASSAGERIMEVIKRVPKIDSENMGGEILEEVGGEVEFVHVDFVYPSRPDSVILKDFSLRVPAGKTVALVGGSGSGKSTVISLLQRFYDPVEGEIRVDGVAIHRLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDATEEEVIEAAKASNAHTFISHLPQGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKIMEMGEDTPFHPHPASSSSSIANKDNHNTSSRRLSLVSQSSSANSIPRVGGGDDVVEEVVVEDKKLPLPSFRRLLALNVPEWKQACMGCLNAVLFGAIQPVYAFSMGSVISVYFLQDHDEIKEKTRIYSLCFLGLAVFSLVVNILQHYNFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRLALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQERILKMLEKAQEGPSHESIRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFQGVINAKALFETFMILVSTGRVIADAGSMTNDLAKGADAVGSVFTILDRYTKTEPDDIDGYKPEKLTGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGIVTIDGRDIKSYHLRSIRKHIGLVSQEPTLFGGTIRENIAYGASNKVDETEIIEAARAANAHDFISSLKEGYETWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALDRVMVGRTSVVVAHRLSTIQNCDLIAVLDKGKVVEKGTHSSLLAQGPSGAYYSLVSLQRRPTKHEG* 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0261 1235 CDD ABC_6TM_Pgp_ABCB1_D2_like 654 969 - -
Pvu4g0261 1235 SMART AAA_5 393 579 IPR003593 -
Pvu4g0261 1235 SMART AAA_5 1014 1207 IPR003593 -
Pvu4g0261 1235 Gene3D ABC transporter type 1, transmembrane domain 29 956 IPR036640 GO:0005524|GO:0016021
Pvu4g0261 1235 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 26 1231 - -
Pvu4g0261 1235 CDD ABC_MTABC3_MDL1_MDL2 987 1227 - -
Pvu4g0261 1235 MobiDBLite consensus disorder prediction 583 606 - -
Pvu4g0261 1235 Gene3D - 356 604 IPR027417 -
Pvu4g0261 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 979 1227 IPR027417 -
Pvu4g0261 1235 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 26 1231 IPR039421 -
Pvu4g0261 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 331 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu4g0261 1235 CDD ABC_6TM_Pgp_ABCB1_D1_like 41 339 - -
Pvu4g0261 1235 MobiDBLite consensus disorder prediction 591 606 - -
Pvu4g0261 1235 CDD ABC_MTABC3_MDL1_MDL2 366 584 - -
Pvu4g0261 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 587 IPR027417 -
Pvu4g0261 1235 Pfam ABC transporter transmembrane region 666 934 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu4g0261 1235 Pfam ABC transporter transmembrane region 41 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu4g0261 1235 SUPERFAMILY ABC transporter transmembrane region 35 347 IPR036640 GO:0005524|GO:0016021
Pvu4g0261 1235 ProSitePatterns ABC transporters family signature. 505 519 IPR017871 GO:0005524
Pvu4g0261 1235 Pfam ABC transporter 384 533 IPR003439 GO:0005524
Pvu4g0261 1235 Pfam ABC transporter 1006 1155 IPR003439 GO:0005524
Pvu4g0261 1235 ProSitePatterns ABC transporters family signature. 1127 1141 IPR017871 GO:0005524
Pvu4g0261 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 602 IPR003439 GO:0005524
Pvu4g0261 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 671 952 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu4g0261 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 987 1224 IPR003439 GO:0005524
Pvu4g0261 1235 SUPERFAMILY ABC transporter transmembrane region 644 971 IPR036640 GO:0005524|GO:0016021
Pvu4g0261 1235 Gene3D - 977 1234 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0261 Pvu-Chr4 2368709 2377275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0261 25 1228 Calmodulin-binding Proteins AT2G36910 44.811 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0261 K05658 - gmx:100807709 2053.48