Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0260 TCTGGACAAAACCGAGTTCGTAGAAGTGGCAATGGTGGACGAAAGCGAGTTCGTAGAAATGGAAATGGTGGACGAAACAAAGTTCGTAGAAGTGGCAATGGAGGTGACGGTGGTGGGTCGGCAATTTCTTCCGAGATGCCGACAGTGACTGTGCGTGATGCCGTTCGCTATGTGCGTAAACTCAGCTATGAGTTTCGTGACCAAAAGGAGAAGTTTTACATGTTCCATCAAGTCTTGGTTGATTACAGGAATAATAGGATTAACTATGCTAGTCTGGTGGCGAGGATTAAGGAGATTTTAAAGGGGCACAAAAAACTGATTTTGGGTTTCAACCATTTCATAGAAAAGGACTATGAGATAACACTTCACAGGGCTGCACCAGAAGAAGAAGAAGTGAAGTTCATGAACAAGATAAAGAATCGATTCCAAAGTGATGAGCCTGTTTACAACTCAATCTTGGAAATTCTGAAAATGTACAAGGAAGGGCTTAAGGACATTGGTGAGGTTTCAAGTAAGAGAACTAGTATGAATGATGCCTTGAATTTTCTGAATAGAGCCAAAGATGTGTTTTGGAACGAAAGGGAGAAGTATGACATGTTGATCCAGATCCTGAAAGATTACAAGGCTGAAAGGATTACCTCTGAGGTTGTTGCTGCGAGGGTGAAAGAGTTACTGAAAGGGCACAGCAGTTTGATTTTGAGATTCAACGCTTTCTTGCCAAAGGAGCATGAGATCAAACTTAAGGACGAACCTTCTCAGGAACTAGTCCGTTTGGTTGACAACATAAAGGAACGATTCAAAGATGATGAGCATCTTTATCAGTCATTCTTGATGAGTATCAAAACGTACAAAGAAGATAAGAGAAAGACAACCTGTGATCTTCATGGTGAGCTTGCTGTCATTTTCAAGGACCACCAAGATCTGCTGAAGGAGTTCACCAGAAAATTTCCTAATTATGACAAAGTTGAAGAGAATGTTGTTGAGGATGAAAAGCCAACACTGAGCATTCCCAAGTGGAAGCAAACATATTTAGGTTTGGTTGTCATCTCCTTCATTGCTAATGTCTTCCACCAACCCTATAACATTATTTGCATGAAAGAGTATTTAATCAAAAGGGTTTCAAAGATTCTTCCCATTGGAGATGGATGGTTCGTTCAGAAGGAAACTTTCAGATGTGATCTTTGCCATAAATTTGTCCAAGAAAATGTGAAAAACCAAATTGTCAACACTGTCAAGATAGCCAACTATGTTATGTCATACGCTTTGCTTAAAAGGGAGAAAGCCACCTACCCAAGCTTGTAA 1302 0.404 SGQNRVRRSGNGGRKRVRRNGNGGRNKVRRSGNGGDGGGSAISSEMPTVTVRDAVRYVRKLSYEFRDQKEKFYMFHQVLVDYRNNRINYASLVARIKEILKGHKKLILGFNHFIEKDYEITLHRAAPEEEEVKFMNKIKNRFQSDEPVYNSILEILKMYKEGLKDIGEVSSKRTSMNDALNFLNRAKDVFWNEREKYDMLIQILKDYKAERITSEVVAARVKELLKGHSSLILRFNAFLPKEHEIKLKDEPSQELVRLVDNIKERFKDDEHLYQSFLMSIKTYKEDKRKTTCDLHGELAVIFKDHQDLLKEFTRKFPNYDKVEENVVEDEKPTLSIPKWKQTYLGLVVISFIANVFHQPYNIICMKEYLIKRVSKILPIGDGWFVQKETFRCDLCHKFVQENVKNQIVNTVKIANYVMSYALLKREKATYPSL* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0260 433 ProSiteProfiles PAH domain profile. 46 117 IPR003822 GO:0006355
Pvu4g0260 433 Gene3D Paired amphipathic helix 126 175 IPR036600 GO:0006355
Pvu4g0260 433 SUPERFAMILY PAH2 domain 171 241 IPR036600 GO:0006355
Pvu4g0260 433 SUPERFAMILY PAH2 domain 47 118 IPR036600 GO:0006355
Pvu4g0260 433 SUPERFAMILY PAH2 domain 128 171 IPR036600 GO:0006355
Pvu4g0260 433 PANTHER SIN3B-RELATED 172 322 IPR039774 GO:0003714
Pvu4g0260 433 PANTHER SIN3B-RELATED 31 171 IPR039774 GO:0003714
Pvu4g0260 433 Gene3D Paired amphipathic helix 53 114 IPR036600 GO:0006355
Pvu4g0260 433 Gene3D Paired amphipathic helix 178 240 IPR036600 GO:0006355
Pvu4g0260 433 Pfam Paired amphipathic helix repeat 70 113 IPR003822 GO:0006355
Pvu4g0260 433 Pfam Paired amphipathic helix repeat 195 239 IPR003822 GO:0006355
Pvu4g0260 433 Pfam Paired amphipathic helix repeat 273 313 IPR003822 GO:0006355
Pvu4g0260 433 MobiDBLite consensus disorder prediction 1 45 - -
Pvu4g0260 433 SUPERFAMILY PAH2 domain 255 314 IPR036600 GO:0006355
Pvu4g0260 433 ProSiteProfiles PAH domain profile. 245 319 IPR003822 GO:0006355
Pvu4g0260 433 MobiDBLite consensus disorder prediction 9 25 - -
Pvu4g0260 433 ProSiteProfiles PAH domain profile. 172 242 IPR003822 GO:0006355
Pvu4g0260 433 Gene3D Paired amphipathic helix 251 319 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0260 Pvu-Chr4 2352495 2364191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0260 161 250 WRKY Transcription Factor Family AT4G12020 38.889 6.15e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu4g0260 PAH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0260 K11644 - pvu:PHAVU_004G023000g 796.964